Search Kitaake

Mutant Information

Mutant Name	FN4084-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4084-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 27

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3143331 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake01g041200
SBS Chr1 34479800 T-C Hetero UTR_3_PRIME
SBS Chr2 424918 G-A Homo INTRON
SBS Chr2 31886562 A-C Hetero INTRON
SBS Chr4 12295059 G-A Hetero INTRON
SBS Chr4 14005238 C-T Hetero INTERGENIC
SBS Chr4 16231749 G-T Hetero INTERGENIC
SBS Chr4 21243420 G-A Hetero INTERGENIC
SBS Chr4 35676953 A-T Hetero INTERGENIC
SBS Chr4 36764202 G-T Homo UTR_5_PRIME
SBS Chr5 11689574 T-G Hetero INTERGENIC
SBS Chr5 17277057 G-T Hetero INTERGENIC
SBS Chr6 6266518 T-G Hetero INTRON
SBS Chr6 7484322 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake06g096400
SBS Chr6 18854672 A-G Hetero INTERGENIC
SBS Chr7 607056 A-T Homo INTERGENIC
SBS Chr7 607057 C-A Homo INTERGENIC
SBS Chr7 609250 G-T Homo INTRON
SBS Chr8 1942006 C-T Homo INTERGENIC
SBS Chr8 17315488 G-A Homo INTERGENIC
SBS Chr9 7188549 G-A Homo INTERGENIC
SBS Chr9 8928953 G-T Homo INTERGENIC
SBS Chr9 11204332 G-A Hetero INTRON
SBS Chr10 8310924 C-T Hetero INTERGENIC
SBS Chr10 10345430 G-A Hetero INTERGENIC
SBS Chr11 10310957 T-A Hetero INTERGENIC
SBS Chr12 23836767 C-T Hetero INTERGENIC

Deletions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 18043827 18043829 2
Deletion Chr3 22434278 22434279 1
Deletion Chr5 27334001 27391000 56999 11
Deletion Chr3 34303179 34303185 6 OsKitaake03g371600

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 6892217 6892220 2
Insertion Chr2 16051564 16051567 2
Insertion Chr3 23350791 23350794 2
Insertion Chr10 6106592 6106595 2
Insertion Chr12 26149693 26149696 2

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 8830009 Chr5 27333211

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3143331	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g041200
SBS	Chr1	34479800	T-C	Hetero	UTR_3_PRIME
SBS	Chr2	424918	G-A	Homo	INTRON
SBS	Chr2	31886562	A-C	Hetero	INTRON
SBS	Chr4	12295059	G-A	Hetero	INTRON
SBS	Chr4	14005238	C-T	Hetero	INTERGENIC
SBS	Chr4	16231749	G-T	Hetero	INTERGENIC
SBS	Chr4	21243420	G-A	Hetero	INTERGENIC
SBS	Chr4	35676953	A-T	Hetero	INTERGENIC
SBS	Chr4	36764202	G-T	Homo	UTR_5_PRIME
SBS	Chr5	11689574	T-G	Hetero	INTERGENIC
SBS	Chr5	17277057	G-T	Hetero	INTERGENIC
SBS	Chr6	6266518	T-G	Hetero	INTRON
SBS	Chr6	7484322	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g096400
SBS	Chr6	18854672	A-G	Hetero	INTERGENIC
SBS	Chr7	607056	A-T	Homo	INTERGENIC
SBS	Chr7	607057	C-A	Homo	INTERGENIC
SBS	Chr7	609250	G-T	Homo	INTRON
SBS	Chr8	1942006	C-T	Homo	INTERGENIC
SBS	Chr8	17315488	G-A	Homo	INTERGENIC
SBS	Chr9	7188549	G-A	Homo	INTERGENIC
SBS	Chr9	8928953	G-T	Homo	INTERGENIC
SBS	Chr9	11204332	G-A	Hetero	INTRON
SBS	Chr10	8310924	C-T	Hetero	INTERGENIC
SBS	Chr10	10345430	G-A	Hetero	INTERGENIC
SBS	Chr11	10310957	T-A	Hetero	INTERGENIC
SBS	Chr12	23836767	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	18043827	18043829	2
Deletion	Chr3	22434278	22434279	1
Deletion	Chr5	27334001	27391000	56999	11
Deletion	Chr3	34303179	34303185	6	OsKitaake03g371600

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	8830009	Chr5	27333211

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes