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Mutant Information

Mutant Name	FN4087-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4087-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 29

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 6098226 C-T Homo INTERGENIC
SBS Chr1 10524532 A-G Homo INTERGENIC
SBS Chr1 16418348 C-A Homo INTERGENIC
SBS Chr1 23350058 A-T Homo INTERGENIC
SBS Chr1 27855332 C-A Homo INTRON
SBS Chr2 15176650 C-T Hetero INTERGENIC
SBS Chr2 29473558 A-T Homo NON_SYNONYMOUS_CODING OsKitaake02g296700
SBS Chr3 7604355 G-A Hetero INTERGENIC
SBS Chr3 18428453 A-G Hetero INTERGENIC
SBS Chr4 8431213 C-G Homo INTERGENIC
SBS Chr4 35795526 C-T Hetero INTERGENIC
SBS Chr4 35795527 C-T Hetero INTERGENIC
SBS Chr5 5390514 A-G Homo INTERGENIC
SBS Chr6 3644678 T-C Hetero UTR_5_PRIME
SBS Chr6 27720715 C-T Hetero INTERGENIC
SBS Chr7 1881589 C-T Hetero INTERGENIC
SBS Chr7 18728131 G-A Hetero INTERGENIC
SBS Chr7 25391705 C-T Homo INTRON
SBS Chr8 12763851 C-T Hetero INTERGENIC
SBS Chr8 12763852 T-A Hetero INTERGENIC
SBS Chr9 4783705 A-G Homo INTERGENIC
SBS Chr9 12750915 G-T Hetero INTERGENIC
SBS Chr9 20725922 G-T Hetero UTR_5_PRIME
SBS Chr10 1595458 T-G Hetero INTERGENIC
SBS Chr10 18040977 C-T Hetero INTERGENIC
SBS Chr11 10324300 C-T Hetero INTERGENIC
SBS Chr11 13595614 G-T Hetero INTRON
SBS Chr11 15621755 T-G Hetero NON_SYNONYMOUS_CODING OsKitaake11g125600
SBS Chr11 18235849 C-T Hetero INTERGENIC

Deletions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 2065634 2065635 1
Deletion Chr11 3950860 3950861 1
Deletion Chr9 9840213 9840214 1
Deletion Chr11 12459798 12459799 1
Deletion Chr2 28956195 28956200 5

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr9 4742553 4742556 2

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 12595626 13381836 OsKitaake09g083100
Inversion Chr9 13305553 13381827
Inversion Chr9 13305575 14132292
Inversion Chr4 34320997 34461863
Inversion Chr4 34321015 34461875

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6098226	C-T	Homo	INTERGENIC
SBS	Chr1	10524532	A-G	Homo	INTERGENIC
SBS	Chr1	16418348	C-A	Homo	INTERGENIC
SBS	Chr1	23350058	A-T	Homo	INTERGENIC
SBS	Chr1	27855332	C-A	Homo	INTRON
SBS	Chr2	15176650	C-T	Hetero	INTERGENIC
SBS	Chr2	29473558	A-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g296700
SBS	Chr3	7604355	G-A	Hetero	INTERGENIC
SBS	Chr3	18428453	A-G	Hetero	INTERGENIC
SBS	Chr4	8431213	C-G	Homo	INTERGENIC
SBS	Chr4	35795526	C-T	Hetero	INTERGENIC
SBS	Chr4	35795527	C-T	Hetero	INTERGENIC
SBS	Chr5	5390514	A-G	Homo	INTERGENIC
SBS	Chr6	3644678	T-C	Hetero	UTR_5_PRIME
SBS	Chr6	27720715	C-T	Hetero	INTERGENIC
SBS	Chr7	1881589	C-T	Hetero	INTERGENIC
SBS	Chr7	18728131	G-A	Hetero	INTERGENIC
SBS	Chr7	25391705	C-T	Homo	INTRON
SBS	Chr8	12763851	C-T	Hetero	INTERGENIC
SBS	Chr8	12763852	T-A	Hetero	INTERGENIC
SBS	Chr9	4783705	A-G	Homo	INTERGENIC
SBS	Chr9	12750915	G-T	Hetero	INTERGENIC
SBS	Chr9	20725922	G-T	Hetero	UTR_5_PRIME
SBS	Chr10	1595458	T-G	Hetero	INTERGENIC
SBS	Chr10	18040977	C-T	Hetero	INTERGENIC
SBS	Chr11	10324300	C-T	Hetero	INTERGENIC
SBS	Chr11	13595614	G-T	Hetero	INTRON
SBS	Chr11	15621755	T-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g125600
SBS	Chr11	18235849	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	2065634	2065635	1
Deletion	Chr11	3950860	3950861	1
Deletion	Chr9	9840213	9840214	1
Deletion	Chr11	12459798	12459799	1
Deletion	Chr2	28956195	28956200	5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	12595626	13381836	OsKitaake09g083100
Inversion	Chr9	13305553	13381827
Inversion	Chr9	13305575	14132292
Inversion	Chr4	34320997	34461863
Inversion	Chr4	34321015	34461875

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes