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| Mutant Information |
|---|
| Mutant Name | FN4088-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4088-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 32
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 5529836 | G-A | Hetero | INTRON | |
| SBS | Chr1 | 5983681 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 6340722 | T-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 7923864 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 16777724 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 16964009 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 16964011 | C-G | Homo | INTERGENIC | |
| SBS | Chr2 | 19961333 | A-T | Homo | INTRON | |
| SBS | Chr2 | 30554106 | G-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 6954686 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 14764183 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 30585331 | A-T | Homo | INTERGENIC | |
| SBS | Chr5 | 6639883 | G-C | Homo | INTERGENIC | |
| SBS | Chr5 | 11481988 | T-C | Homo | INTERGENIC | |
| SBS | Chr5 | 11724328 | T-A | Homo | INTERGENIC | |
| SBS | Chr6 | 13317002 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 2391447 | G-A | Hetero | UTR_3_PRIME | |
| SBS | Chr7 | 6533843 | T-G | Homo | INTERGENIC | |
| SBS | Chr7 | 21973630 | C-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake07g184300 |
| SBS | Chr7 | 24145226 | G-T | Homo | INTERGENIC | |
| SBS | Chr7 | 24145229 | A-T | Homo | INTERGENIC | |
| SBS | Chr7 | 27665467 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 3164294 | A-G | Homo | INTERGENIC | |
| SBS | Chr8 | 7647707 | G-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 9376184 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 9092042 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 14555199 | A-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 14994038 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 1566007 | C-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake12g023800 |
| SBS | Chr12 | 6116421 | A-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 15263115 | G-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 19284165 | G-A | Hetero | INTERGENIC |
Deletions: 6
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr5 | 2040098 | 2040104 | 6 | |
| Deletion | Chr2 | 16652424 | 16652425 | 1 | |
| Deletion | Chr1 | 22930771 | 22930775 | 4 | |
| Deletion | Chr5 | 24301532 | 24301535 | 3 | |
| Deletion | Chr12 | 26000556 | 26000561 | 5 | OsKitaake12g215000 |
| Deletion | Chr2 | 32033849 | 32033852 | 3 |
Inversions: 6
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr1 | 9875835 | 10063431 | |
| Inversion | Chr1 | 9875867 | 10063444 | |
| Inversion | Chr10 | 14556132 | 14679160 | |
| Inversion | Chr10 | 14703130 | 15606777 | OsKitaake10g101300 |
| Inversion | Chr10 | 21982811 | 22192924 | OsKitaake10g181000 |
| Inversion | Chr10 | 21982814 | 22192932 | OsKitaake10g181000 |