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| Mutant Information |
|---|
| Mutant Name | FN4089-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4089-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 24
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 12286583 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 15271916 | T-A | Homo | INTERGENIC | |
| SBS | Chr1 | 23891270 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 24817611 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 5327254 | C-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 18281344 | C-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 23614792 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 26569121 | G-T | Homo | INTERGENIC | |
| SBS | Chr3 | 26687332 | A-T | Homo | INTERGENIC | |
| SBS | Chr3 | 28393554 | A-C | Homo | NON_SYNONYMOUS_CODING | OsKitaake03g293800 |
| SBS | Chr4 | 8160113 | T-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 14196006 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake04g068000 |
| SBS | Chr6 | 27221558 | C-T | Homo | INTERGENIC | |
| SBS | Chr7 | 2909054 | T-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 18924593 | T-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 19037345 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 3103060 | G-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 3103069 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 12941904 | G-A | Homo | INTERGENIC | |
| SBS | Chr10 | 12941905 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 2034976 | T-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 2306322 | G-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake11g033100 |
| SBS | Chr12 | 11053530 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 21479564 | A-T | Hetero | INTERGENIC |
Deletions: 12
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr5 | 7357301 | 7357316 | 15 | |
| Deletion | Chr8 | 8320865 | 8320870 | 5 | |
| Deletion | Chr1 | 10116955 | 10116956 | 1 | |
| Deletion | Chr1 | 10349250 | 10349377 | 127 | |
| Deletion | Chr11 | 11078227 | 11078236 | 9 | |
| Deletion | Chr9 | 19612374 | 19612376 | 2 | |
| Deletion | Chr12 | 19826415 | 19826427 | 12 | |
| Deletion | Chr7 | 21328735 | 21328740 | 5 | |
| Deletion | Chr9 | 21855064 | 21855065 | 1 | OsKitaake09g193400 |
| Deletion | Chr6 | 25650725 | 25650737 | 12 | |
| Deletion | Chr3 | 28076170 | 28076174 | 4 | |
| Deletion | Chr1 | 44158275 | 44158289 | 14 | OsKitaake01g493000 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr11 | 12641742 | 12641752 | 9 | |
| Insertion | Chr12 | 1020842 | 1020846 | 3 |
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr12 | 10865887 | Chr8 | 5623065 | OsKitaake12g100800 |