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| Mutant Information |
|---|
| Mutant Name | FN4090-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4090-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 32
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 3230500 | A-T | Hetero | INTRON | |
| SBS | Chr1 | 29765450 | C-T | Homo | INTERGENIC | |
| SBS | Chr1 | 43293888 | T-A | Hetero | INTRON | |
| SBS | Chr2 | 1402172 | A-G | Hetero | UTR_3_PRIME | |
| SBS | Chr2 | 7713549 | G-A | Hetero | INTRON | |
| SBS | Chr2 | 13586175 | C-A | Homo | INTERGENIC | |
| SBS | Chr2 | 19915238 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 19948079 | A-T | Hetero | INTRON | |
| SBS | Chr2 | 23891801 | T-C | Hetero | UTR_5_PRIME | |
| SBS | Chr2 | 36371513 | A-T | Homo | INTERGENIC | |
| SBS | Chr3 | 9132161 | C-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 18955080 | C-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 19329790 | T-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 21954004 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 29678198 | G-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 30084677 | A-G | Homo | INTERGENIC | |
| SBS | Chr4 | 16125734 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 20978057 | G-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 3848813 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 4472748 | G-C | Homo | UTR_3_PRIME | |
| SBS | Chr5 | 20565783 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 21878619 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 11508700 | C-G | Hetero | INTRON | |
| SBS | Chr7 | 16406882 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 11222870 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 12448161 | A-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 10821346 | A-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 11880134 | A-G | Hetero | INTRON | |
| SBS | Chr11 | 7648552 | G-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 8120284 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 20768209 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 25556330 | C-T | Hetero | INTERGENIC |
Deletions: 11
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr12 | 1801119 | 1801121 | 2 | |
| Deletion | Chr6 | 3829416 | 3829433 | 17 | OsKitaake06g052800 |
| Deletion | Chr3 | 4089589 | 4089590 | 1 | |
| Deletion | Chr9 | 6845828 | 6845834 | 6 | |
| Deletion | Chr12 | 10558417 | 10558418 | 1 | |
| Deletion | Chr12 | 13971760 | 13971762 | 2 | |
| Deletion | Chr4 | 17783687 | 17783700 | 13 | |
| Deletion | Chr4 | 25699203 | 25699215 | 12 | |
| Deletion | Chr12 | 26358151 | 26358154 | 3 | |
| Deletion | Chr8 | 28506548 | 28506550 | 2 | |
| Deletion | Chr4 | 34601465 | 34601484 | 19 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr5 | 19905754 | 19905759 | 4 |
Inversions: 3
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr2 | 7900351 | 8239082 | |
| Inversion | Chr2 | 7900362 | 8239223 | |
| Inversion | Chr7 | 23189827 | 23217543 | OsKitaake07g200500 |