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| Mutant Information |
|---|
| Mutant Name | FN4093-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4093-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 38
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 2871880 | A-G | Hetero | UTR_3_PRIME | |
| SBS | Chr1 | 3994610 | T-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 7612247 | C-T | Homo | INTERGENIC | |
| SBS | Chr1 | 18343630 | T-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 26863123 | C-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 28662900 | A-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake01g278000 |
| SBS | Chr1 | 30138776 | G-C | Homo | INTERGENIC | |
| SBS | Chr1 | 30838620 | G-A | Hetero | STOP_GAINED | OsKitaake01g305900 |
| SBS | Chr2 | 2202636 | A-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 13242116 | A-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 17011682 | A-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 23398211 | C-T | Homo | SYNONYMOUS_CODING | |
| SBS | Chr3 | 13265907 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 15114762 | A-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 15948020 | T-C | Homo | INTERGENIC | |
| SBS | Chr3 | 18445095 | C-T | Homo | INTRON | |
| SBS | Chr3 | 18839987 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 19302532 | G-T | Homo | INTERGENIC | |
| SBS | Chr3 | 28290289 | A-T | Homo | INTERGENIC | |
| SBS | Chr4 | 15373998 | C-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 27087331 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 19815964 | A-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 24623590 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 7231848 | T-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 8301623 | T-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 29262411 | A-C | Homo | INTRON | |
| SBS | Chr6 | 30634173 | G-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 17893099 | C-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 28340217 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 13886230 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 18623344 | C-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 4955688 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 16298481 | G-A | Homo | INTERGENIC | |
| SBS | Chr9 | 17287794 | A-G | Homo | INTERGENIC | |
| SBS | Chr10 | 22616359 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 24349369 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 28494519 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 9697804 | G-A | Homo | INTERGENIC |
Deletions: 18
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr6 | 727355 | 727356 | 1 | OsKitaake06g007200 |
| Deletion | Chr3 | 1359484 | 1359494 | 10 | |
| Deletion | Chr12 | 2174833 | 2174834 | 1 | |
| Deletion | Chr6 | 3211001 | 3396000 | 184999 | 34 |
| Deletion | Chr5 | 3651089 | 3651097 | 8 | |
| Deletion | Chr8 | 5795119 | 5795123 | 4 | OsKitaake08g063500 |
| Deletion | Chr8 | 6447030 | 6447031 | 1 | |
| Deletion | Chr10 | 14403491 | 14403492 | 1 | |
| Deletion | Chr12 | 18008416 | 18008425 | 9 | |
| Deletion | Chr4 | 18239739 | 18239740 | 1 | |
| Deletion | Chr5 | 26664457 | 26664458 | 1 | |
| Deletion | Chr12 | 26723647 | 26723648 | 1 | |
| Deletion | Chr8 | 27288566 | 27288579 | 13 | |
| Deletion | Chr2 | 27476856 | 27476866 | 10 | |
| Deletion | Chr3 | 28297160 | 28297162 | 2 | |
| Deletion | Chr1 | 30031723 | 30031728 | 5 | |
| Deletion | Chr2 | 32314382 | 32314387 | 5 | |
| Deletion | Chr3 | 34176396 | 34176411 | 15 | OsKitaake03g369500 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr2 | 26338357 | 26338362 | 4 | |
| Insertion | Chr4 | 25273281 | 25273284 | 2 | |
| Insertion | Chr9 | 17957240 | 17957243 | 2 |