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Mutant Information

Mutant Name	FN4094-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4094-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 33

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 15221438 A-G Hetero INTERGENIC
SBS Chr1 18850080 G-A Hetero INTERGENIC
SBS Chr1 36114884 C-T Hetero INTERGENIC
SBS Chr1 39677731 T-A Hetero INTERGENIC
SBS Chr2 15500432 A-T Homo SYNONYMOUS_CODING
SBS Chr2 20167579 C-T Hetero INTERGENIC
SBS Chr2 20655608 G-A Hetero INTERGENIC
SBS Chr2 33589746 A-G Homo UTR_3_PRIME
SBS Chr3 17473274 A-C Homo NON_SYNONYMOUS_CODING OsKitaake03g215100
SBS Chr3 19268380 C-A Hetero INTERGENIC
SBS Chr4 2151949 G-T Hetero INTERGENIC
SBS Chr4 6429457 C-A Hetero INTERGENIC
SBS Chr4 11620544 G-A Hetero INTERGENIC
SBS Chr4 17127295 C-T Hetero INTERGENIC
SBS Chr4 31179227 C-T Hetero UTR_3_PRIME
SBS Chr4 35189336 T-A Hetero INTERGENIC
SBS Chr5 2323002 G-A Homo INTERGENIC
SBS Chr5 15739309 T-C Hetero UTR_3_PRIME
SBS Chr5 20914030 C-T Hetero INTERGENIC
SBS Chr5 29783940 G-T Hetero INTERGENIC
SBS Chr6 8223710 A-T Hetero INTERGENIC
SBS Chr6 8255041 T-C Hetero INTRON
SBS Chr6 30760052 T-A Homo UTR_5_PRIME
SBS Chr7 12161910 C-T Hetero INTERGENIC
SBS Chr8 5354379 C-T Hetero INTERGENIC
SBS Chr9 11249656 A-G Hetero INTERGENIC
SBS Chr9 13117090 A-T Hetero INTERGENIC
SBS Chr10 5351427 G-C Hetero INTERGENIC
SBS Chr10 9329056 A-T Hetero INTRON
SBS Chr10 17847927 G-T Homo INTERGENIC
SBS Chr11 19921417 A-G Homo INTERGENIC
SBS Chr12 7945305 C-T Hetero INTERGENIC
SBS Chr12 24501183 T-A Hetero INTERGENIC

Deletions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 321118 321121 3
Deletion Chr12 5228288 5228298 10
Deletion Chr9 14673903 14673910 7
Deletion Chr4 15248070 15248074 4
Deletion Chr4 15590590 15590591 1
Deletion Chr11 18268629 18268633 4

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 2545129 2545134 4
Insertion Chr6 1344386 1344389 2
Insertion Chr8 10233837 10233839 1
Insertion Chr11 8637653 8637728 74

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15221438	A-G	Hetero	INTERGENIC
SBS	Chr1	18850080	G-A	Hetero	INTERGENIC
SBS	Chr1	36114884	C-T	Hetero	INTERGENIC
SBS	Chr1	39677731	T-A	Hetero	INTERGENIC
SBS	Chr2	15500432	A-T	Homo	SYNONYMOUS_CODING
SBS	Chr2	20167579	C-T	Hetero	INTERGENIC
SBS	Chr2	20655608	G-A	Hetero	INTERGENIC
SBS	Chr2	33589746	A-G	Homo	UTR_3_PRIME
SBS	Chr3	17473274	A-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g215100
SBS	Chr3	19268380	C-A	Hetero	INTERGENIC
SBS	Chr4	2151949	G-T	Hetero	INTERGENIC
SBS	Chr4	6429457	C-A	Hetero	INTERGENIC
SBS	Chr4	11620544	G-A	Hetero	INTERGENIC
SBS	Chr4	17127295	C-T	Hetero	INTERGENIC
SBS	Chr4	31179227	C-T	Hetero	UTR_3_PRIME
SBS	Chr4	35189336	T-A	Hetero	INTERGENIC
SBS	Chr5	2323002	G-A	Homo	INTERGENIC
SBS	Chr5	15739309	T-C	Hetero	UTR_3_PRIME
SBS	Chr5	20914030	C-T	Hetero	INTERGENIC
SBS	Chr5	29783940	G-T	Hetero	INTERGENIC
SBS	Chr6	8223710	A-T	Hetero	INTERGENIC
SBS	Chr6	8255041	T-C	Hetero	INTRON
SBS	Chr6	30760052	T-A	Homo	UTR_5_PRIME
SBS	Chr7	12161910	C-T	Hetero	INTERGENIC
SBS	Chr8	5354379	C-T	Hetero	INTERGENIC
SBS	Chr9	11249656	A-G	Hetero	INTERGENIC
SBS	Chr9	13117090	A-T	Hetero	INTERGENIC
SBS	Chr10	5351427	G-C	Hetero	INTERGENIC
SBS	Chr10	9329056	A-T	Hetero	INTRON
SBS	Chr10	17847927	G-T	Homo	INTERGENIC
SBS	Chr11	19921417	A-G	Homo	INTERGENIC
SBS	Chr12	7945305	C-T	Hetero	INTERGENIC
SBS	Chr12	24501183	T-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	321118	321121	3
Deletion	Chr12	5228288	5228298	10
Deletion	Chr9	14673903	14673910	7
Deletion	Chr4	15248070	15248074	4
Deletion	Chr4	15590590	15590591	1
Deletion	Chr11	18268629	18268633	4

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes