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| Mutant Information |
|---|
| Mutant Name | FN4095-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4095-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 25
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 8470896 | C-A | Hetero | UTR_5_PRIME | |
| SBS | Chr1 | 11958219 | T-A | Homo | INTERGENIC | |
| SBS | Chr1 | 12234294 | G-A | Homo | INTERGENIC | |
| SBS | Chr1 | 18216764 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 23419497 | A-T | Hetero | INTRON | |
| SBS | Chr2 | 29224968 | T-C | Homo | INTERGENIC | |
| SBS | Chr2 | 29605682 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 6245044 | C-A | Homo | INTRON | |
| SBS | Chr3 | 6245045 | T-A | Homo | INTRON | |
| SBS | Chr3 | 22862811 | C-A | Homo | INTRON | |
| SBS | Chr4 | 15707590 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 26470552 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 14154342 | T-A | Homo | INTERGENIC | |
| SBS | Chr7 | 4564216 | G-A | Homo | INTERGENIC | |
| SBS | Chr7 | 12748340 | G-A | Homo | INTERGENIC | |
| SBS | Chr7 | 24701584 | A-T | Homo | INTERGENIC | |
| SBS | Chr8 | 10840364 | A-T | Homo | INTERGENIC | |
| SBS | Chr9 | 3986787 | G-A | Homo | SYNONYMOUS_CODING | |
| SBS | Chr9 | 5613852 | G-C | Homo | INTERGENIC | |
| SBS | Chr10 | 469265 | A-G | Homo | INTERGENIC | |
| SBS | Chr10 | 3444233 | T-A | Homo | INTERGENIC | |
| SBS | Chr10 | 8880528 | G-C | Hetero | INTERGENIC | |
| SBS | Chr10 | 9368575 | A-C | Hetero | INTERGENIC | |
| SBS | Chr10 | 9935121 | A-G | Hetero | INTERGENIC | |
| SBS | Chr10 | 17850157 | A-T | Homo | UTR_3_PRIME |
Deletions: 6
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr1 | 719176 | 719189 | 13 | OsKitaake01g006800 |
| Deletion | Chr10 | 2985332 | 2985338 | 6 | OsKitaake10g024500 |
| Deletion | Chr9 | 4654889 | 4654890 | 1 | |
| Deletion | Chr1 | 13780296 | 13780299 | 3 | |
| Deletion | Chr3 | 17358936 | 17359015 | 79 | |
| Deletion | Chr3 | 29783825 | 29783851 | 26 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr3 | 14519147 | 14519150 | 2 |
Inversions: 3
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr2 | 3111351 | 3865100 | 2 |
| Inversion | Chr5 | 10920475 | 11215790 | |
| Inversion | Chr5 | 10920488 | 11215794 |
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr11 | 1232611 | Chr2 | 3039379 | OsKitaake11g014800 |