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| Mutant Information |
|---|
| Mutant Name | FN4096-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4096-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 23
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 25009394 | C-T | Homo | INTRON | |
| SBS | Chr1 | 33390281 | G-C | Hetero | INTRON | |
| SBS | Chr1 | 33583612 | C-T | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr1 | 35373738 | G-A | Homo | INTERGENIC | |
| SBS | Chr1 | 36207375 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 38102340 | A-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 38983300 | A-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 43534302 | G-A | Hetero | UTR_3_PRIME | |
| SBS | Chr2 | 21380432 | A-T | Homo | INTRON | |
| SBS | Chr3 | 2015293 | T-A | Homo | INTERGENIC | |
| SBS | Chr3 | 3251839 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 29360358 | G-A | Homo | INTRON | |
| SBS | Chr4 | 32605697 | G-A | Homo | INTRON | |
| SBS | Chr5 | 6277581 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 16021754 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 3790504 | A-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 1376631 | T-A | Homo | INTERGENIC | |
| SBS | Chr8 | 1376632 | G-T | Homo | INTERGENIC | |
| SBS | Chr8 | 11427052 | G-C | Hetero | INTERGENIC | |
| SBS | Chr10 | 3709471 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 14646364 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 12138427 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 22775534 | G-A | Hetero | INTERGENIC |
Deletions: 8
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr2 | 3067173 | 3067177 | 4 | |
| Deletion | Chr4 | 11746287 | 11746292 | 5 | |
| Deletion | Chr4 | 13803347 | 13803352 | 5 | |
| Deletion | Chr3 | 13844001 | 13856000 | 11999 | OsKitaake03g182800 |
| Deletion | Chr4 | 15730572 | 15730580 | 8 | |
| Deletion | Chr11 | 19966001 | 20152000 | 185999 | 10 |
| Deletion | Chr2 | 27418168 | 27418170 | 2 | |
| Deletion | Chr2 | 34150392 | 34150398 | 6 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr5 | 4910902 | 5199645 | OsKitaake05g058000 |
| Inversion | Chr5 | 4910910 | 5199671 | OsKitaake05g058000 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr12 | 8478040 | Chr1 | 3101849 | |
| Translocation | Chr3 | 33713591 | Chr2 | 8813561 | 2 |