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| Mutant Information |
|---|
| Mutant Name | FN4098-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4098-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 26
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 44165630 | A-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 8982185 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 16895826 | A-T | Homo | INTERGENIC | |
| SBS | Chr2 | 31499404 | A-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 14645422 | A-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 19812372 | C-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 30556607 | G-T | Hetero | UTR_5_PRIME | |
| SBS | Chr4 | 6028338 | G-C | Homo | INTRON | |
| SBS | Chr4 | 13443444 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 14913176 | C-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 32499924 | A-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 652000 | G-A | Hetero | INTRON | |
| SBS | Chr5 | 13528420 | T-A | Hetero | INTRON | |
| SBS | Chr5 | 14285018 | A-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 22194075 | C-T | Hetero | UTR_3_PRIME | |
| SBS | Chr6 | 27243305 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 16186235 | T-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 18743748 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 5433290 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 8892567 | T-C | Homo | INTRON | |
| SBS | Chr9 | 2298893 | G-A | Homo | INTERGENIC | |
| SBS | Chr9 | 10939543 | C-T | Homo | INTRON | |
| SBS | Chr11 | 19008460 | T-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 9461703 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 15616470 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 19910141 | C-G | Hetero | INTERGENIC |
Deletions: 12
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr2 | 2095807 | 2095809 | 2 | |
| Deletion | Chr7 | 5207322 | 5207327 | 5 | |
| Deletion | Chr11 | 5494885 | 5494903 | 18 | |
| Deletion | Chr9 | 6474433 | 6474434 | 1 | |
| Deletion | Chr11 | 10186480 | 10186495 | 15 | |
| Deletion | Chr9 | 10573580 | 10573584 | 4 | |
| Deletion | Chr5 | 22887711 | 22887715 | 4 | OsKitaake05g189800 |
| Deletion | Chr11 | 25201602 | 25201603 | 1 | |
| Deletion | Chr12 | 25893001 | 25949000 | 55999 | 8 |
| Deletion | Chr5 | 27067621 | 27067631 | 10 | |
| Deletion | Chr6 | 28049754 | 28049757 | 3 | |
| Deletion | Chr1 | 42355585 | 42355586 | 1 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr8 | 21864226 | 21864228 | 1 |
Translocations: 5
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr4 | 2842355 | Chr2 | 15565950 | |
| Translocation | Chr12 | 25948378 | Chr6 | 13995521 | 2 |
| Translocation | Chr12 | 25952374 | Chr6 | 13995512 | 2 |
| Translocation | Chr12 | 25952411 | Chr9 | 14977216 | 2 |
| Translocation | Chr12 | 25953976 | Chr9 | 14977213 | 2 |