Search Kitaake
| Mutant Information |
|---|
| Mutant Name | FN4099-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4099-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 19
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 12217773 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 12280128 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 10913697 | T-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 12529048 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 14432972 | C-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 3314494 | G-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 12267310 | T-A | Hetero | INTRON | |
| SBS | Chr5 | 12170535 | C-T | Homo | INTERGENIC | |
| SBS | Chr6 | 772615 | G-A | Hetero | INTRON | |
| SBS | Chr6 | 8811998 | T-G | Homo | INTERGENIC | |
| SBS | Chr6 | 12903524 | G-T | Homo | INTERGENIC | |
| SBS | Chr7 | 3056019 | A-T | Homo | INTERGENIC | |
| SBS | Chr7 | 3056021 | G-T | Homo | INTERGENIC | |
| SBS | Chr7 | 28443347 | G-A | Hetero | INTRON | |
| SBS | Chr9 | 8984909 | A-C | Hetero | UTR_5_PRIME | |
| SBS | Chr9 | 21319951 | T-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake09g184200 |
| SBS | Chr10 | 17817319 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 23600952 | T-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 6557542 | G-T | Hetero | INTERGENIC |
Deletions: 11
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr5 | 692551 | 692562 | 11 | |
| Deletion | Chr3 | 5161821 | 5161822 | 1 | |
| Deletion | Chr10 | 5595185 | 5595186 | 1 | |
| Deletion | Chr11 | 6271001 | 6341000 | 69999 | 2 |
| Deletion | Chr10 | 10465251 | 10465257 | 6 | |
| Deletion | Chr2 | 12517782 | 12517788 | 6 | OsKitaake02g140700 |
| Deletion | Chr4 | 19904970 | 19904971 | 1 | |
| Deletion | Chr3 | 26196086 | 26196092 | 6 | |
| Deletion | Chr4 | 29670210 | 29670216 | 6 | |
| Deletion | Chr4 | 30319036 | 30319047 | 11 | |
| Deletion | Chr1 | 43673909 | 43673916 | 7 | OsKitaake01g485400 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr8 | 26792197 | 26792202 | 4 | |
| Insertion | Chr6 | 14772101 | 14772168 | 66 |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr9 | 46580 | 50904 | |
| Inversion | Chr9 | 46581 | 50929 | |
| Inversion | Chr3 | 33485043 | 33679703 | OsKitaake03g362550 |
| Inversion | Chr3 | 33485051 | 33679701 | OsKitaake03g362550 |
Translocations: 4
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr6 | 1793986 | Chr1 | 11311819 | OsKitaake06g021500 |
| Translocation | Chr6 | 1793991 | Chr1 | 11312157 | OsKitaake06g021500 |
| Translocation | Chr7 | 25895412 | Chr1 | 34032445 | 2 |
| Translocation | Chr7 | 25896918 | Chr1 | 34032444 | 2 |