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Mutant Information

Mutant Name	FN410-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN410-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 32

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 16678571 A-T Homo NON_SYNONYMOUS_CODING OsKitaake01g177400
SBS Chr1 44020210 A-T Hetero UTR_3_PRIME
SBS Chr2 3112482 A-G Hetero INTERGENIC
SBS Chr2 35062768 A-G Hetero INTERGENIC
SBS Chr3 5197390 G-A Homo INTERGENIC
SBS Chr3 12029173 C-T Hetero UTR_5_PRIME
SBS Chr3 19225004 C-G Homo INTERGENIC
SBS Chr3 22297130 A-T Hetero INTERGENIC
SBS Chr3 32211142 G-T Hetero INTERGENIC
SBS Chr4 2913017 T-C Hetero INTERGENIC
SBS Chr4 6328269 G-A Homo INTRON
SBS Chr4 20654340 C-T Hetero INTERGENIC
SBS Chr5 1610273 A-T Homo INTERGENIC
SBS Chr5 1610302 C-T Homo INTERGENIC
SBS Chr5 1610303 C-T Homo INTERGENIC
SBS Chr5 1612118 C-T Homo INTERGENIC
SBS Chr6 3276053 C-T Homo INTRON
SBS Chr7 2449133 T-G Homo INTERGENIC
SBS Chr7 7174965 C-T Homo INTERGENIC
SBS Chr8 11303626 G-A Homo INTERGENIC
SBS Chr9 1779626 T-C Hetero INTRON
SBS Chr9 6676523 C-T Hetero START_GAINED
SBS Chr9 9325905 G-A Hetero SYNONYMOUS_CODING
SBS Chr10 15651256 G-T Hetero INTERGENIC
SBS Chr10 20701936 A-T Hetero INTERGENIC
SBS Chr10 23922319 C-T Hetero INTERGENIC
SBS Chr11 6996830 G-A Homo NON_SYNONYMOUS_CODING OsKitaake11g080240
SBS Chr11 12275032 T-G Homo INTRON
SBS Chr11 20497401 T-C Hetero INTERGENIC
SBS Chr11 21915147 T-A Hetero INTRON
SBS Chr11 23182005 G-A Hetero INTERGENIC
SBS Chr12 517726 G-C Homo INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 1284001 1294000 9999 2
Deletion Chr11 1940349 1940351 2
Deletion Chr4 4466715 4466716 1
Deletion Chr5 6599818 6599820 2
Deletion Chr5 7726413 7726418 5
Deletion Chr1 8783001 8796000 12999
Deletion Chr4 10474001 10493000 18999
Deletion Chr9 13208625 13208631 6
Deletion Chr7 13703001 13728000 24999
Deletion Chr7 14313463 14313469 6
Deletion Chr1 17488001 17499000 10999
Deletion Chr1 27072001 27085000 12999
Deletion Chr4 28102802 28102803 1

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 9765307 9765311 3
Insertion Chr3 35321570 35321573 2
Insertion Chr3 4089589 4089591 1
Insertion Chr5 30240668 30240670 1
Insertion Chr7 11984659 11984661 1

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 2194826 3008063
Inversion Chr4 2196129 3008274
Inversion Chr7 4460466 5160706 2
Inversion Chr7 4460599 5160753 2

Translocations: 6

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 3307800 Chr3 5849634 OsKitaake03g083000
Translocation Chr8 3307874 Chr3 5849161 OsKitaake03g083000
Translocation Chr7 18116864 Chr2 6873705 OsKitaake07g146000
Translocation Chr7 18130461 Chr2 6873697
Translocation Chr6 25862612 Chr3 7487626 OsKitaake06g230200
Translocation Chr6 25866852 Chr3 7487617 OsKitaake06g230300

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16678571	A-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g177400
SBS	Chr1	44020210	A-T	Hetero	UTR_3_PRIME
SBS	Chr2	3112482	A-G	Hetero	INTERGENIC
SBS	Chr2	35062768	A-G	Hetero	INTERGENIC
SBS	Chr3	5197390	G-A	Homo	INTERGENIC
SBS	Chr3	12029173	C-T	Hetero	UTR_5_PRIME
SBS	Chr3	19225004	C-G	Homo	INTERGENIC
SBS	Chr3	22297130	A-T	Hetero	INTERGENIC
SBS	Chr3	32211142	G-T	Hetero	INTERGENIC
SBS	Chr4	2913017	T-C	Hetero	INTERGENIC
SBS	Chr4	6328269	G-A	Homo	INTRON
SBS	Chr4	20654340	C-T	Hetero	INTERGENIC
SBS	Chr5	1610273	A-T	Homo	INTERGENIC
SBS	Chr5	1610302	C-T	Homo	INTERGENIC
SBS	Chr5	1610303	C-T	Homo	INTERGENIC
SBS	Chr5	1612118	C-T	Homo	INTERGENIC
SBS	Chr6	3276053	C-T	Homo	INTRON
SBS	Chr7	2449133	T-G	Homo	INTERGENIC
SBS	Chr7	7174965	C-T	Homo	INTERGENIC
SBS	Chr8	11303626	G-A	Homo	INTERGENIC
SBS	Chr9	1779626	T-C	Hetero	INTRON
SBS	Chr9	6676523	C-T	Hetero	START_GAINED
SBS	Chr9	9325905	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr10	15651256	G-T	Hetero	INTERGENIC
SBS	Chr10	20701936	A-T	Hetero	INTERGENIC
SBS	Chr10	23922319	C-T	Hetero	INTERGENIC
SBS	Chr11	6996830	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake11g080240
SBS	Chr11	12275032	T-G	Homo	INTRON
SBS	Chr11	20497401	T-C	Hetero	INTERGENIC
SBS	Chr11	21915147	T-A	Hetero	INTRON
SBS	Chr11	23182005	G-A	Hetero	INTERGENIC
SBS	Chr12	517726	G-C	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	1284001	1294000	9999	2
Deletion	Chr11	1940349	1940351	2
Deletion	Chr4	4466715	4466716	1
Deletion	Chr5	6599818	6599820	2
Deletion	Chr5	7726413	7726418	5
Deletion	Chr1	8783001	8796000	12999
Deletion	Chr4	10474001	10493000	18999
Deletion	Chr9	13208625	13208631	6
Deletion	Chr7	13703001	13728000	24999
Deletion	Chr7	14313463	14313469	6
Deletion	Chr1	17488001	17499000	10999
Deletion	Chr1	27072001	27085000	12999
Deletion	Chr4	28102802	28102803	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	2194826	3008063
Inversion	Chr4	2196129	3008274
Inversion	Chr7	4460466	5160706	2
Inversion	Chr7	4460599	5160753	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes