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Mutant Information

Mutant Name	FN4100-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4100-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 33

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 11673637 G-A Homo NON_SYNONYMOUS_CODING OsKitaake01g140800
SBS Chr1 17143687 C-T Homo INTERGENIC
SBS Chr1 17252846 C-T Hetero INTERGENIC
SBS Chr1 21329443 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g207716
SBS Chr2 2540221 G-A Hetero INTERGENIC
SBS Chr2 2540222 A-T Hetero INTERGENIC
SBS Chr2 21408585 G-A Homo INTERGENIC
SBS Chr2 25116100 G-C Hetero INTERGENIC
SBS Chr4 16268499 T-G Hetero INTERGENIC
SBS Chr4 28820993 C-T Hetero INTERGENIC
SBS Chr4 28934846 T-G Hetero INTERGENIC
SBS Chr4 31163118 A-C Hetero INTERGENIC
SBS Chr4 34879161 T-C Hetero INTERGENIC
SBS Chr4 35686441 C-A Hetero INTERGENIC
SBS Chr5 14392008 G-A Hetero INTERGENIC
SBS Chr6 26257441 G-A Hetero INTERGENIC
SBS Chr7 2596219 G-C Hetero INTRON
SBS Chr7 4778604 C-T Hetero INTERGENIC
SBS Chr7 16142015 C-A Hetero INTERGENIC
SBS Chr7 16142016 A-T Hetero INTERGENIC
SBS Chr7 28689828 T-A Homo INTERGENIC
SBS Chr8 17861862 C-T Homo INTERGENIC
SBS Chr8 24124472 C-T Hetero INTERGENIC
SBS Chr9 5702795 G-A Homo INTERGENIC
SBS Chr9 10473911 C-T Hetero INTERGENIC
SBS Chr9 10972742 G-A Hetero INTERGENIC
SBS Chr11 9840219 C-T Hetero INTERGENIC
SBS Chr11 12562388 A-G Hetero INTERGENIC
SBS Chr11 27396131 G-T Hetero INTERGENIC
SBS Chr11 27396136 T-G Hetero INTERGENIC
SBS Chr11 28009172 C-T Hetero INTERGENIC
SBS Chr12 4216846 A-T Hetero INTERGENIC
SBS Chr12 11228819 C-T Hetero INTERGENIC

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 1027250 1027259 9 OsKitaake11g012800
Deletion Chr12 4344862 4344863 1
Deletion Chr6 4449827 4449830 3
Deletion Chr4 5633180 5633188 8
Deletion Chr12 10211271 10211283 12
Deletion Chr1 14184179 14184181 2
Deletion Chr9 16721660 16721666 6
Deletion Chr7 16843498 16843499 1
Deletion Chr9 17013834 17013840 6
Deletion Chr7 18008049 18008059 10
Deletion Chr10 18200361 18200362 1
Deletion Chr2 19216369 19216372 3
Deletion Chr9 22507839 22507841 2
Deletion Chr4 25018277 25018284 7
Deletion Chr8 25922167 25922172 5
Deletion Chr6 26237001 26253000 15999
Deletion Chr11 29136782 29136783 1 OsKitaake11g238800
Deletion Chr6 29198628 29198633 5

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 12155085 12155088 2
Insertion Chr6 12650871 12650874 2
Insertion Chr8 20686743 20686749 5

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 32771959 32966308 OsKitaake02g339000
Inversion Chr2 32771964 32966308 OsKitaake02g339000

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 10921784 Chr6 26258535
Translocation Chr11 10921803 Chr6 26253493
Translocation Chr7 23876097 Chr1 39335295 OsKitaake07g210400
Translocation Chr7 23879192 Chr1 39335302

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11673637	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g140800
SBS	Chr1	17143687	C-T	Homo	INTERGENIC
SBS	Chr1	17252846	C-T	Hetero	INTERGENIC
SBS	Chr1	21329443	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g207716
SBS	Chr2	2540221	G-A	Hetero	INTERGENIC
SBS	Chr2	2540222	A-T	Hetero	INTERGENIC
SBS	Chr2	21408585	G-A	Homo	INTERGENIC
SBS	Chr2	25116100	G-C	Hetero	INTERGENIC
SBS	Chr4	16268499	T-G	Hetero	INTERGENIC
SBS	Chr4	28820993	C-T	Hetero	INTERGENIC
SBS	Chr4	28934846	T-G	Hetero	INTERGENIC
SBS	Chr4	31163118	A-C	Hetero	INTERGENIC
SBS	Chr4	34879161	T-C	Hetero	INTERGENIC
SBS	Chr4	35686441	C-A	Hetero	INTERGENIC
SBS	Chr5	14392008	G-A	Hetero	INTERGENIC
SBS	Chr6	26257441	G-A	Hetero	INTERGENIC
SBS	Chr7	2596219	G-C	Hetero	INTRON
SBS	Chr7	4778604	C-T	Hetero	INTERGENIC
SBS	Chr7	16142015	C-A	Hetero	INTERGENIC
SBS	Chr7	16142016	A-T	Hetero	INTERGENIC
SBS	Chr7	28689828	T-A	Homo	INTERGENIC
SBS	Chr8	17861862	C-T	Homo	INTERGENIC
SBS	Chr8	24124472	C-T	Hetero	INTERGENIC
SBS	Chr9	5702795	G-A	Homo	INTERGENIC
SBS	Chr9	10473911	C-T	Hetero	INTERGENIC
SBS	Chr9	10972742	G-A	Hetero	INTERGENIC
SBS	Chr11	9840219	C-T	Hetero	INTERGENIC
SBS	Chr11	12562388	A-G	Hetero	INTERGENIC
SBS	Chr11	27396131	G-T	Hetero	INTERGENIC
SBS	Chr11	27396136	T-G	Hetero	INTERGENIC
SBS	Chr11	28009172	C-T	Hetero	INTERGENIC
SBS	Chr12	4216846	A-T	Hetero	INTERGENIC
SBS	Chr12	11228819	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	1027250	1027259	9	OsKitaake11g012800
Deletion	Chr12	4344862	4344863	1
Deletion	Chr6	4449827	4449830	3
Deletion	Chr4	5633180	5633188	8
Deletion	Chr12	10211271	10211283	12
Deletion	Chr1	14184179	14184181	2
Deletion	Chr9	16721660	16721666	6
Deletion	Chr7	16843498	16843499	1
Deletion	Chr9	17013834	17013840	6
Deletion	Chr7	18008049	18008059	10
Deletion	Chr10	18200361	18200362	1
Deletion	Chr2	19216369	19216372	3
Deletion	Chr9	22507839	22507841	2
Deletion	Chr4	25018277	25018284	7
Deletion	Chr8	25922167	25922172	5
Deletion	Chr6	26237001	26253000	15999
Deletion	Chr11	29136782	29136783	1	OsKitaake11g238800
Deletion	Chr6	29198628	29198633	5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	32771959	32966308	OsKitaake02g339000
Inversion	Chr2	32771964	32966308	OsKitaake02g339000

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes