Search Kitaake
| Mutant Information |
|---|
| Mutant Name | FN4101-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4101-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 31
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 828110 | A-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 2807188 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake01g035400 |
| SBS | Chr1 | 34583986 | T-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 36800824 | T-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake01g391400 |
| SBS | Chr1 | 36800825 | C-A | Hetero | STOP_GAINED | OsKitaake01g391400 |
| SBS | Chr2 | 13106797 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 17000046 | T-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 25925507 | A-T | Hetero | INTRON | |
| SBS | Chr2 | 29200921 | A-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 4216709 | A-C | Hetero | INTRON | |
| SBS | Chr3 | 28817208 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 6802013 | T-C | Homo | INTERGENIC | |
| SBS | Chr4 | 13571729 | T-G | Homo | INTRON | |
| SBS | Chr4 | 16240060 | C-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 17267392 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 7922429 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 16031011 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 2465050 | A-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 7092049 | T-A | Homo | INTERGENIC | |
| SBS | Chr7 | 10499240 | C-G | Homo | INTERGENIC | |
| SBS | Chr7 | 23936079 | T-C | Homo | INTERGENIC | |
| SBS | Chr7 | 25761216 | G-A | Homo | INTRON | |
| SBS | Chr8 | 3503652 | A-T | Homo | INTERGENIC | |
| SBS | Chr8 | 8800029 | A-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 10676177 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 16833767 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 17474023 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 23448653 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 13430123 | G-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 19723575 | A-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 15228339 | T-C | Hetero | INTERGENIC |
Deletions: 10
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr2 | 1622918 | 1622921 | 3 | |
| Deletion | Chr6 | 2770797 | 2770800 | 3 | OsKitaake06g037900 |
| Deletion | Chr7 | 7093079 | 7093081 | 2 | |
| Deletion | Chr1 | 8489715 | 8489718 | 3 | |
| Deletion | Chr7 | 11990478 | 11990479 | 1 | |
| Deletion | Chr3 | 17623354 | 17623358 | 4 | |
| Deletion | Chr4 | 29846251 | 29846261 | 10 | |
| Deletion | Chr4 | 30700312 | 30700319 | 7 | |
| Deletion | Chr3 | 34658524 | 34658525 | 1 | |
| Deletion | Chr1 | 38564061 | 38564079 | 18 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr5 | 2265960 | 2265963 | 2 | |
| Insertion | Chr7 | 8176073 | 8176075 | 1 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr2 | 4952258 | 5212419 | OsKitaake02g071900 |
| Inversion | Chr2 | 4952264 | 5212420 | OsKitaake02g071900 |
Translocations: 4
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr11 | 11018165 | Chr4 | 15809774 | OsKitaake11g106300 |
| Translocation | Chr11 | 11025189 | Chr4 | 30490687 | OsKitaake04g235200 |
| Translocation | Chr10 | 16997201 | Chr4 | 15809760 | OsKitaake10g116500 |
| Translocation | Chr10 | 16997216 | Chr4 | 15807410 | OsKitaake10g116500 |