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Mutant Information

Mutant Name	FN4103-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4103-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 20

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3659048 C-T Hetero SPLICE_SITE_DONOR OsKitaake01g049000
SBS Chr1 4546531 C-T Hetero INTERGENIC
SBS Chr1 9959169 A-T Hetero INTRON
SBS Chr1 10739308 T-G Hetero INTERGENIC
SBS Chr1 24770890 A-T Hetero INTRON
SBS Chr1 28340979 C-T Hetero INTERGENIC
SBS Chr1 30389358 G-A Hetero INTERGENIC
SBS Chr2 11626995 T-A Hetero INTERGENIC
SBS Chr2 15951590 C-T Homo INTERGENIC
SBS Chr3 32098173 T-C Homo NON_SYNONYMOUS_CODING OsKitaake03g340000
SBS Chr5 1718081 G-T Hetero INTERGENIC
SBS Chr5 12870399 G-T Hetero INTERGENIC
SBS Chr5 18943328 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake05g148200
SBS Chr6 8647810 C-T Homo INTERGENIC
SBS Chr7 3980798 G-A Homo INTRON
SBS Chr7 8503874 C-T Hetero INTERGENIC
SBS Chr8 18969110 G-C Hetero INTERGENIC
SBS Chr10 5577719 T-C Hetero INTERGENIC
SBS Chr11 17383275 G-T Homo INTERGENIC
SBS Chr12 12415048 C-T Hetero INTERGENIC

Deletions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 4453793 4453795 2
Deletion Chr9 11790901 11790902 1
Deletion Chr3 13459885 13459888 3
Deletion Chr2 19016204 19016211 7
Deletion Chr6 19683864 19683866 2
Deletion Chr3 23606943 23606944 1

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 30706662 30706665 2
Insertion Chr9 12579202 12579206 3
Insertion Chr12 22826970 22826973 2
Insertion Chr5 15513322 15513324 1
Insertion Chr6 16104561 16104563 1

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 4387215 Chr5 20509427 OsKitaake05g163200
Translocation Chr7 4392296 Chr5 20509431 OsKitaake05g163200
Translocation Chr11 4933869 Chr9 21979764 OsKitaake09g195900

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3659048	C-T	Hetero	SPLICE_SITE_DONOR	OsKitaake01g049000
SBS	Chr1	4546531	C-T	Hetero	INTERGENIC
SBS	Chr1	9959169	A-T	Hetero	INTRON
SBS	Chr1	10739308	T-G	Hetero	INTERGENIC
SBS	Chr1	24770890	A-T	Hetero	INTRON
SBS	Chr1	28340979	C-T	Hetero	INTERGENIC
SBS	Chr1	30389358	G-A	Hetero	INTERGENIC
SBS	Chr2	11626995	T-A	Hetero	INTERGENIC
SBS	Chr2	15951590	C-T	Homo	INTERGENIC
SBS	Chr3	32098173	T-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g340000
SBS	Chr5	1718081	G-T	Hetero	INTERGENIC
SBS	Chr5	12870399	G-T	Hetero	INTERGENIC
SBS	Chr5	18943328	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g148200
SBS	Chr6	8647810	C-T	Homo	INTERGENIC
SBS	Chr7	3980798	G-A	Homo	INTRON
SBS	Chr7	8503874	C-T	Hetero	INTERGENIC
SBS	Chr8	18969110	G-C	Hetero	INTERGENIC
SBS	Chr10	5577719	T-C	Hetero	INTERGENIC
SBS	Chr11	17383275	G-T	Homo	INTERGENIC
SBS	Chr12	12415048	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	4453793	4453795	2
Deletion	Chr9	11790901	11790902	1
Deletion	Chr3	13459885	13459888	3
Deletion	Chr2	19016204	19016211	7
Deletion	Chr6	19683864	19683866	2
Deletion	Chr3	23606943	23606944	1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	4387215	Chr5	20509427	OsKitaake05g163200
Translocation	Chr7	4392296	Chr5	20509431	OsKitaake05g163200
Translocation	Chr11	4933869	Chr9	21979764	OsKitaake09g195900

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes