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| Mutant Information |
|---|
| Mutant Name | FN4104-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4104-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 22
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 4430974 | C-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 13095394 | T-C | Homo | INTERGENIC | |
| SBS | Chr1 | 43524012 | G-A | Homo | INTRON | |
| SBS | Chr2 | 11028320 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 15324915 | A-T | Homo | INTERGENIC | |
| SBS | Chr2 | 34051305 | G-T | Homo | INTERGENIC | |
| SBS | Chr2 | 35505042 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 777623 | G-A | Hetero | STOP_GAINED | OsKitaake03g012200 |
| SBS | Chr4 | 19159121 | G-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 11240553 | C-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 18797981 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 30167770 | T-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 8002074 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 18729184 | C-G | Homo | INTERGENIC | |
| SBS | Chr8 | 8042455 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 4260852 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 4260857 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 4842360 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 19705296 | T-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 20677762 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 26252673 | T-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 26252674 | C-T | Hetero | INTERGENIC |
Deletions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr1 | 22721018 | 22721020 | 2 | |
| Deletion | Chr11 | 22890111 | 22890119 | 8 | |
| Deletion | Chr12 | 26778001 | 26971000 | 192999 | 35 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr12 | 4664310 | 4664320 | 9 | OsKitaake12g061600  |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr9 | 3984499 | 4206246 | OsKitaake09g021500 |
Translocations: 3
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr7 | 9579086 | Chr3 | 20992854 | OsKitaake03g233700 |
| Translocation | Chr7 | 9579224 | Chr3 | 20992854 | OsKitaake03g233700 |
| Translocation | Chr7 | 9579239 | Chr1 | 14371047 |