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Mutant Information

Mutant Name	FN4105-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4105-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 24

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 16803971 G-C Homo INTERGENIC
SBS Chr1 16803972 A-T Homo INTERGENIC
SBS Chr1 36153237 C-T Homo START_GAINED
SBS Chr2 8182011 T-A Hetero INTERGENIC
SBS Chr2 17864229 G-C Hetero INTERGENIC
SBS Chr2 21554926 T-C Hetero INTERGENIC
SBS Chr2 23982676 A-T Hetero INTERGENIC
SBS Chr2 35142364 G-A Homo INTERGENIC
SBS Chr2 35888310 T-C Homo INTERGENIC
SBS Chr3 11557652 C-T Hetero INTERGENIC
SBS Chr4 17563899 C-A Hetero INTERGENIC
SBS Chr4 28698652 T-A Homo INTERGENIC
SBS Chr6 456322 T-G Hetero INTRON
SBS Chr7 22459180 T-A Hetero INTERGENIC
SBS Chr7 26592622 T-G Hetero INTRON
SBS Chr7 26592623 T-C Hetero INTRON
SBS Chr7 28062288 G-T Hetero INTRON
SBS Chr8 13478778 G-A Hetero INTERGENIC
SBS Chr8 15208559 T-C Hetero INTERGENIC
SBS Chr8 19077887 T-A Hetero SYNONYMOUS_CODING
SBS Chr10 1388904 T-G Hetero INTERGENIC
SBS Chr10 5368805 C-T Hetero INTERGENIC
SBS Chr11 8200806 C-T Hetero INTERGENIC
SBS Chr11 9740913 C-T Homo UTR_5_PRIME

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 7408372 7408376 4
Deletion Chr7 14552754 14552762 8
Deletion Chr1 20290518 20290519 1
Deletion Chr11 23173815 23173817 2
Deletion Chr7 25680001 25708000 27999 4
Deletion Chr7 25712001 25734000 21999 2
Deletion Chr11 26110955 26110956 1
Deletion Chr1 33997526 33997530 4
Deletion Chr3 34429093 34429101 8

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 35749794 35749797 2
Insertion Chr7 1254156 1254159 2
Insertion Chr8 10595786 10595789 2
Insertion Chr9 2696793 2696796 2
Insertion Chr11 12496351 12496355 3

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 9973850 10940733 OsKitaake08g092000
Inversion Chr3 28768568 29025732 OsKitaake03g298000
Inversion Chr3 28768584 29025739 OsKitaake03g298000

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16803971	G-C	Homo	INTERGENIC
SBS	Chr1	16803972	A-T	Homo	INTERGENIC
SBS	Chr1	36153237	C-T	Homo	START_GAINED
SBS	Chr2	8182011	T-A	Hetero	INTERGENIC
SBS	Chr2	17864229	G-C	Hetero	INTERGENIC
SBS	Chr2	21554926	T-C	Hetero	INTERGENIC
SBS	Chr2	23982676	A-T	Hetero	INTERGENIC
SBS	Chr2	35142364	G-A	Homo	INTERGENIC
SBS	Chr2	35888310	T-C	Homo	INTERGENIC
SBS	Chr3	11557652	C-T	Hetero	INTERGENIC
SBS	Chr4	17563899	C-A	Hetero	INTERGENIC
SBS	Chr4	28698652	T-A	Homo	INTERGENIC
SBS	Chr6	456322	T-G	Hetero	INTRON
SBS	Chr7	22459180	T-A	Hetero	INTERGENIC
SBS	Chr7	26592622	T-G	Hetero	INTRON
SBS	Chr7	26592623	T-C	Hetero	INTRON
SBS	Chr7	28062288	G-T	Hetero	INTRON
SBS	Chr8	13478778	G-A	Hetero	INTERGENIC
SBS	Chr8	15208559	T-C	Hetero	INTERGENIC
SBS	Chr8	19077887	T-A	Hetero	SYNONYMOUS_CODING
SBS	Chr10	1388904	T-G	Hetero	INTERGENIC
SBS	Chr10	5368805	C-T	Hetero	INTERGENIC
SBS	Chr11	8200806	C-T	Hetero	INTERGENIC
SBS	Chr11	9740913	C-T	Homo	UTR_5_PRIME

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	7408372	7408376	4
Deletion	Chr7	14552754	14552762	8
Deletion	Chr1	20290518	20290519	1
Deletion	Chr11	23173815	23173817	2
Deletion	Chr7	25680001	25708000	27999	4
Deletion	Chr7	25712001	25734000	21999	2
Deletion	Chr11	26110955	26110956	1
Deletion	Chr1	33997526	33997530	4
Deletion	Chr3	34429093	34429101	8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	9973850	10940733	OsKitaake08g092000
Inversion	Chr3	28768568	29025732	OsKitaake03g298000
Inversion	Chr3	28768584	29025739	OsKitaake03g298000

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes