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| Mutant Information |
|---|
| Mutant Name | FN4106-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4106-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 29
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 7688783 | C-T | Homo | INTERGENIC | |
| SBS | Chr1 | 8141294 | T-C | Homo | INTERGENIC | |
| SBS | Chr1 | 18108511 | G-T | Hetero | START_GAINED | |
| SBS | Chr1 | 36715586 | A-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 36715587 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 37880433 | A-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 37794 | A-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 9959639 | G-T | Hetero | INTRON | |
| SBS | Chr3 | 2508688 | A-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake03g035500 |
| SBS | Chr3 | 29222560 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 1650116 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 10381537 | G-A | Homo | INTRON | |
| SBS | Chr4 | 12441239 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 29502750 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake04g226200 |
| SBS | Chr4 | 34077270 | T-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 34093211 | G-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 844001 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 844002 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 27494993 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 15421457 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 4874582 | A-T | Homo | INTERGENIC | |
| SBS | Chr8 | 17202505 | T-C | Homo | INTERGENIC | |
| SBS | Chr8 | 18563723 | C-G | Homo | INTERGENIC | |
| SBS | Chr9 | 8474935 | C-T | Homo | INTERGENIC | |
| SBS | Chr9 | 17296339 | T-A | Homo | INTERGENIC | |
| SBS | Chr11 | 13486555 | C-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 23699307 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 16388277 | T-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 21771165 | A-C | Homo | INTERGENIC |
Deletions: 14
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr4 | 703001 | 736000 | 32999 | 4 |
| Deletion | Chr4 | 4937208 | 4937210 | 2 | |
| Deletion | Chr5 | 4950001 | 4968000 | 17999 | |
| Deletion | Chr3 | 5056852 | 5056853 | 1 | |
| Deletion | Chr5 | 6443001 | 6457000 | 13999 | |
| Deletion | Chr1 | 6527712 | 6527715 | 3 | |
| Deletion | Chr10 | 7609770 | 7609777 | 7 | |
| Deletion | Chr2 | 17183127 | 17183136 | 9 | |
| Deletion | Chr2 | 17415510 | 17415511 | 1 | |
| Deletion | Chr8 | 17866063 | 17866067 | 4 | |
| Deletion | Chr5 | 21057656 | 21057657 | 1 | OsKitaake05g169200 |
| Deletion | Chr12 | 24773027 | 24773036 | 9 | |
| Deletion | Chr2 | 28125826 | 28126094 | 268 | |
| Deletion | Chr4 | 34204305 | 34204315 | 10 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr2 | 28849671 | 28849673 | 1 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr4 | 706145 | 855315 | OsKitaake04g005700 |
| Inversion | Chr4 | 734736 | 855316 | OsKitaake04g005900 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr12 | 24456903 | Chr5 | 4972186 | OsKitaake05g055800 |
| Translocation | Chr12 | 24456940 | Chr5 | 4969024 |