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Mutant Information

Mutant Name	FN4107-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4107-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 32

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2697507 C-A Hetero INTRON
SBS Chr1 13373183 A-C Hetero INTERGENIC
SBS Chr1 21809651 C-T Hetero INTERGENIC
SBS Chr2 2963437 A-C Hetero INTRON
SBS Chr2 7316491 C-A Hetero INTERGENIC
SBS Chr2 25093150 G-A Homo INTERGENIC
SBS Chr2 29482520 A-C Hetero INTERGENIC
SBS Chr2 30704555 A-G Hetero INTRON
SBS Chr3 2439567 T-A Homo INTERGENIC
SBS Chr3 11804291 G-T Hetero UTR_3_PRIME
SBS Chr3 32695425 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g346400
SBS Chr4 9422028 C-T Hetero INTERGENIC
SBS Chr4 13895656 T-G Hetero INTERGENIC
SBS Chr4 15705917 C-G Hetero INTERGENIC
SBS Chr5 23617317 C-G Homo INTERGENIC
SBS Chr6 14355136 A-C Homo INTERGENIC
SBS Chr7 3330974 C-T Homo NON_SYNONYMOUS_CODING OsKitaake07g042200
SBS Chr7 9724709 C-A Hetero INTERGENIC
SBS Chr7 13989520 A-T Hetero INTERGENIC
SBS Chr7 17246557 T-A Homo INTRON
SBS Chr8 12683507 A-T Hetero INTERGENIC
SBS Chr8 22848132 A-C Hetero INTERGENIC
SBS Chr8 28856841 C-T Hetero INTERGENIC
SBS Chr9 20606421 C-T Hetero INTERGENIC
SBS Chr10 10382809 A-G Hetero INTERGENIC
SBS Chr10 17715716 T-A Homo INTRON
SBS Chr11 7843544 G-A Homo START_GAINED
SBS Chr11 11478904 C-T Homo INTERGENIC
SBS Chr11 24760071 C-T Homo INTRON
SBS Chr12 13994410 A-T Hetero INTERGENIC
SBS Chr12 21729777 T-G Homo INTERGENIC
SBS Chr12 24248919 A-G Hetero INTRON

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 1609464 1609465 1
Deletion Chr7 3693060 3693061 1
Deletion Chr9 15576020 15576021 1
Deletion Chr9 17149001 17261000 111999 17
Deletion Chr10 20934102 20934104 2
Deletion Chr12 21755370 21755378 8
Deletion Chr11 22626687 22626689 2
Deletion Chr3 25539309 25539310 1
Deletion Chr6 29314001 29384000 69999 7

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 17499611 17499614 2
Insertion Chr3 391440 391443 2
Insertion Chr5 24856645 24856652 6
Insertion Chr8 433521 433524 2
Insertion Chr8 16575639 16575642 2
Insertion Chr12 14779926 14779928 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 33574632 34082094 OsKitaake03g368100
Inversion Chr3 33574660 34082102 OsKitaake03g368100

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2697507	C-A	Hetero	INTRON
SBS	Chr1	13373183	A-C	Hetero	INTERGENIC
SBS	Chr1	21809651	C-T	Hetero	INTERGENIC
SBS	Chr2	2963437	A-C	Hetero	INTRON
SBS	Chr2	7316491	C-A	Hetero	INTERGENIC
SBS	Chr2	25093150	G-A	Homo	INTERGENIC
SBS	Chr2	29482520	A-C	Hetero	INTERGENIC
SBS	Chr2	30704555	A-G	Hetero	INTRON
SBS	Chr3	2439567	T-A	Homo	INTERGENIC
SBS	Chr3	11804291	G-T	Hetero	UTR_3_PRIME
SBS	Chr3	32695425	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g346400
SBS	Chr4	9422028	C-T	Hetero	INTERGENIC
SBS	Chr4	13895656	T-G	Hetero	INTERGENIC
SBS	Chr4	15705917	C-G	Hetero	INTERGENIC
SBS	Chr5	23617317	C-G	Homo	INTERGENIC
SBS	Chr6	14355136	A-C	Homo	INTERGENIC
SBS	Chr7	3330974	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake07g042200
SBS	Chr7	9724709	C-A	Hetero	INTERGENIC
SBS	Chr7	13989520	A-T	Hetero	INTERGENIC
SBS	Chr7	17246557	T-A	Homo	INTRON
SBS	Chr8	12683507	A-T	Hetero	INTERGENIC
SBS	Chr8	22848132	A-C	Hetero	INTERGENIC
SBS	Chr8	28856841	C-T	Hetero	INTERGENIC
SBS	Chr9	20606421	C-T	Hetero	INTERGENIC
SBS	Chr10	10382809	A-G	Hetero	INTERGENIC
SBS	Chr10	17715716	T-A	Homo	INTRON
SBS	Chr11	7843544	G-A	Homo	START_GAINED
SBS	Chr11	11478904	C-T	Homo	INTERGENIC
SBS	Chr11	24760071	C-T	Homo	INTRON
SBS	Chr12	13994410	A-T	Hetero	INTERGENIC
SBS	Chr12	21729777	T-G	Homo	INTERGENIC
SBS	Chr12	24248919	A-G	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	1609464	1609465	1
Deletion	Chr7	3693060	3693061	1
Deletion	Chr9	15576020	15576021	1
Deletion	Chr9	17149001	17261000	111999	17
Deletion	Chr10	20934102	20934104	2
Deletion	Chr12	21755370	21755378	8
Deletion	Chr11	22626687	22626689	2
Deletion	Chr3	25539309	25539310	1
Deletion	Chr6	29314001	29384000	69999	7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	33574632	34082094	OsKitaake03g368100
Inversion	Chr3	33574660	34082102	OsKitaake03g368100

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes