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Mutant Information

Mutant Name	FN4108-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4108-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2908738 G-A Hetero INTERGENIC
SBS Chr2 3508407 G-T Hetero INTERGENIC
SBS Chr2 26710906 A-C Homo INTERGENIC
SBS Chr2 36663435 T-C Homo INTRON
SBS Chr3 17146629 G-A Hetero INTERGENIC
SBS Chr3 20247000 G-A Hetero INTERGENIC
SBS Chr4 10565296 G-A Hetero INTERGENIC
SBS Chr4 11290211 G-A Homo INTERGENIC
SBS Chr4 16189316 G-A Hetero INTERGENIC
SBS Chr4 18033095 A-G Hetero INTERGENIC
SBS Chr4 24020117 C-T Hetero INTERGENIC
SBS Chr4 25362222 T-C Hetero INTERGENIC
SBS Chr4 28342926 G-T Hetero INTERGENIC
SBS Chr5 1767011 C-T Homo INTERGENIC
SBS Chr5 10948102 G-T Homo INTERGENIC
SBS Chr5 14152740 G-A Homo INTERGENIC
SBS Chr6 2855034 G-A Hetero INTERGENIC
SBS Chr6 6342425 C-G Homo INTERGENIC
SBS Chr6 12454468 G-A Hetero INTERGENIC
SBS Chr6 18744274 C-T Hetero INTERGENIC
SBS Chr6 21436175 C-T Hetero INTERGENIC
SBS Chr6 22170989 C-T Hetero INTERGENIC
SBS Chr6 29928389 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake06g280300
SBS Chr6 29928895 C-G Hetero INTRON
SBS Chr6 29928896 C-A Hetero SPLICE_SITE_REGION
SBS Chr7 8281813 T-A Homo INTERGENIC
SBS Chr7 13903532 T-A Homo INTERGENIC
SBS Chr7 18169070 C-A Hetero INTERGENIC
SBS Chr7 18392830 G-A Hetero INTRON
SBS Chr7 24627457 C-T Hetero UTR_3_PRIME
SBS Chr8 5327892 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake08g057900
SBS Chr9 1562217 G-A Hetero INTERGENIC
SBS Chr9 8904773 T-C Hetero INTERGENIC
SBS Chr10 11338830 A-T Hetero INTERGENIC
SBS Chr10 18299685 C-T Hetero INTERGENIC
SBS Chr12 4317185 G-T Homo INTERGENIC
SBS Chr12 5394403 G-T Homo INTERGENIC

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 1279922 1279925 3
Deletion Chr12 4085172 4085176 4
Deletion Chr12 5394627 5394652 25
Deletion Chr1 10027472 10027495 23
Deletion Chr12 12249048 12249053 5
Deletion Chr6 12379167 12379252 85
Deletion Chr5 14862457 14862458 1
Deletion Chr6 24583221 24583240 19
Deletion Chr6 24968660 24968661 1

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 34882748 34882751 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 23100556 23507288 2
Inversion Chr5 23100568 23507983 2
Inversion Chr4 24390801 24529146 2
Inversion Chr4 24390809 24529153 2

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 22282735 Chr4 31420953 OsKitaake09g201700
Translocation Chr9 22282744 Chr4 31422313 OsKitaake09g201700

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2908738	G-A	Hetero	INTERGENIC
SBS	Chr2	3508407	G-T	Hetero	INTERGENIC
SBS	Chr2	26710906	A-C	Homo	INTERGENIC
SBS	Chr2	36663435	T-C	Homo	INTRON
SBS	Chr3	17146629	G-A	Hetero	INTERGENIC
SBS	Chr3	20247000	G-A	Hetero	INTERGENIC
SBS	Chr4	10565296	G-A	Hetero	INTERGENIC
SBS	Chr4	11290211	G-A	Homo	INTERGENIC
SBS	Chr4	16189316	G-A	Hetero	INTERGENIC
SBS	Chr4	18033095	A-G	Hetero	INTERGENIC
SBS	Chr4	24020117	C-T	Hetero	INTERGENIC
SBS	Chr4	25362222	T-C	Hetero	INTERGENIC
SBS	Chr4	28342926	G-T	Hetero	INTERGENIC
SBS	Chr5	1767011	C-T	Homo	INTERGENIC
SBS	Chr5	10948102	G-T	Homo	INTERGENIC
SBS	Chr5	14152740	G-A	Homo	INTERGENIC
SBS	Chr6	2855034	G-A	Hetero	INTERGENIC
SBS	Chr6	6342425	C-G	Homo	INTERGENIC
SBS	Chr6	12454468	G-A	Hetero	INTERGENIC
SBS	Chr6	18744274	C-T	Hetero	INTERGENIC
SBS	Chr6	21436175	C-T	Hetero	INTERGENIC
SBS	Chr6	22170989	C-T	Hetero	INTERGENIC
SBS	Chr6	29928389	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g280300
SBS	Chr6	29928895	C-G	Hetero	INTRON
SBS	Chr6	29928896	C-A	Hetero	SPLICE_SITE_REGION
SBS	Chr7	8281813	T-A	Homo	INTERGENIC
SBS	Chr7	13903532	T-A	Homo	INTERGENIC
SBS	Chr7	18169070	C-A	Hetero	INTERGENIC
SBS	Chr7	18392830	G-A	Hetero	INTRON
SBS	Chr7	24627457	C-T	Hetero	UTR_3_PRIME
SBS	Chr8	5327892	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g057900
SBS	Chr9	1562217	G-A	Hetero	INTERGENIC
SBS	Chr9	8904773	T-C	Hetero	INTERGENIC
SBS	Chr10	11338830	A-T	Hetero	INTERGENIC
SBS	Chr10	18299685	C-T	Hetero	INTERGENIC
SBS	Chr12	4317185	G-T	Homo	INTERGENIC
SBS	Chr12	5394403	G-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	1279922	1279925	3
Deletion	Chr12	4085172	4085176	4
Deletion	Chr12	5394627	5394652	25
Deletion	Chr1	10027472	10027495	23
Deletion	Chr12	12249048	12249053	5
Deletion	Chr6	12379167	12379252	85
Deletion	Chr5	14862457	14862458	1
Deletion	Chr6	24583221	24583240	19
Deletion	Chr6	24968660	24968661	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	23100556	23507288	2
Inversion	Chr5	23100568	23507983	2
Inversion	Chr4	24390801	24529146	2
Inversion	Chr4	24390809	24529153	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes