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Mutant Information

Mutant Name	FN4109-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4109-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 36

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 22191902 G-A Hetero INTERGENIC
SBS Chr1 22191903 G-A Hetero INTERGENIC
SBS Chr1 38062963 C-T Homo SYNONYMOUS_CODING
SBS Chr2 8159584 G-T Hetero INTERGENIC
SBS Chr2 20663345 G-A Homo INTERGENIC
SBS Chr2 25260153 C-T Homo INTERGENIC
SBS Chr2 27802889 A-T Homo INTERGENIC
SBS Chr2 27802890 A-T Homo INTERGENIC
SBS Chr3 17421485 C-A Hetero INTERGENIC
SBS Chr3 20658469 T-A Hetero INTRON
SBS Chr3 26024103 G-A Hetero INTRON
SBS Chr3 31713149 C-T Hetero INTERGENIC
SBS Chr4 7028266 C-A Hetero INTERGENIC
SBS Chr5 2082560 A-G Hetero UTR_3_PRIME
SBS Chr6 14711738 T-A Hetero INTERGENIC
SBS Chr6 17747059 A-T Hetero INTERGENIC
SBS Chr6 17747071 G-T Hetero INTERGENIC
SBS Chr6 27948608 C-A Hetero INTERGENIC
SBS Chr6 28016559 G-A Hetero INTERGENIC
SBS Chr7 4015061 C-A Hetero INTERGENIC
SBS Chr7 4808062 A-T Homo INTRON
SBS Chr8 20326494 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake08g150000
SBS Chr8 21884241 C-A Hetero INTERGENIC
SBS Chr8 27201665 C-T Hetero INTRON
SBS Chr9 18960654 G-T Hetero UTR_3_PRIME
SBS Chr9 19695012 A-T Hetero INTERGENIC
SBS Chr10 649591 C-T Hetero INTERGENIC
SBS Chr10 8492600 G-A Hetero INTERGENIC
SBS Chr10 23686732 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake10g203300
SBS Chr11 9096343 G-T Hetero INTERGENIC
SBS Chr11 21206022 G-T Hetero INTERGENIC
SBS Chr12 1544689 C-T Homo INTERGENIC
SBS Chr12 8854671 G-A Hetero INTERGENIC
SBS Chr12 19823111 G-A Hetero INTERGENIC
SBS Chr12 25384830 T-C Hetero INTRON
SBS Chr12 26307023 C-T Hetero INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 869001 914000 44999 6
Deletion Chr7 4799184 4799189 5 OsKitaake07g058800
Deletion Chr10 7075178 7075187 9
Deletion Chr8 9453037 9453039 2
Deletion Chr10 13362015 13362016 1
Deletion Chr4 20918036 20918037 1
Deletion Chr1 25905001 26314000 408999 48
Deletion Chr5 30211755 30211756 1
Deletion Chr2 30713280 30713288 8
Deletion Chr1 41852908 41852910 2

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 7782621 7782624 2
Insertion Chr3 411665 411669 3
Insertion Chr9 21060780 21060784 3
Insertion Chr11 11876774 11876777 2
Insertion Chr7 14345184 14345186 1

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 2623753 3487295 2
Inversion Chr1 2623763 3487318 2
Inversion Chr2 32566491 32937192 OsKitaake02g332700
Inversion Chr2 32566496 32938670 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	22191902	G-A	Hetero	INTERGENIC
SBS	Chr1	22191903	G-A	Hetero	INTERGENIC
SBS	Chr1	38062963	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr2	8159584	G-T	Hetero	INTERGENIC
SBS	Chr2	20663345	G-A	Homo	INTERGENIC
SBS	Chr2	25260153	C-T	Homo	INTERGENIC
SBS	Chr2	27802889	A-T	Homo	INTERGENIC
SBS	Chr2	27802890	A-T	Homo	INTERGENIC
SBS	Chr3	17421485	C-A	Hetero	INTERGENIC
SBS	Chr3	20658469	T-A	Hetero	INTRON
SBS	Chr3	26024103	G-A	Hetero	INTRON
SBS	Chr3	31713149	C-T	Hetero	INTERGENIC
SBS	Chr4	7028266	C-A	Hetero	INTERGENIC
SBS	Chr5	2082560	A-G	Hetero	UTR_3_PRIME
SBS	Chr6	14711738	T-A	Hetero	INTERGENIC
SBS	Chr6	17747059	A-T	Hetero	INTERGENIC
SBS	Chr6	17747071	G-T	Hetero	INTERGENIC
SBS	Chr6	27948608	C-A	Hetero	INTERGENIC
SBS	Chr6	28016559	G-A	Hetero	INTERGENIC
SBS	Chr7	4015061	C-A	Hetero	INTERGENIC
SBS	Chr7	4808062	A-T	Homo	INTRON
SBS	Chr8	20326494	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g150000
SBS	Chr8	21884241	C-A	Hetero	INTERGENIC
SBS	Chr8	27201665	C-T	Hetero	INTRON
SBS	Chr9	18960654	G-T	Hetero	UTR_3_PRIME
SBS	Chr9	19695012	A-T	Hetero	INTERGENIC
SBS	Chr10	649591	C-T	Hetero	INTERGENIC
SBS	Chr10	8492600	G-A	Hetero	INTERGENIC
SBS	Chr10	23686732	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g203300
SBS	Chr11	9096343	G-T	Hetero	INTERGENIC
SBS	Chr11	21206022	G-T	Hetero	INTERGENIC
SBS	Chr12	1544689	C-T	Homo	INTERGENIC
SBS	Chr12	8854671	G-A	Hetero	INTERGENIC
SBS	Chr12	19823111	G-A	Hetero	INTERGENIC
SBS	Chr12	25384830	T-C	Hetero	INTRON
SBS	Chr12	26307023	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	869001	914000	44999	6
Deletion	Chr7	4799184	4799189	5	OsKitaake07g058800
Deletion	Chr10	7075178	7075187	9
Deletion	Chr8	9453037	9453039	2
Deletion	Chr10	13362015	13362016	1
Deletion	Chr4	20918036	20918037	1
Deletion	Chr1	25905001	26314000	408999	48
Deletion	Chr5	30211755	30211756	1
Deletion	Chr2	30713280	30713288	8
Deletion	Chr1	41852908	41852910	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	2623753	3487295	2
Inversion	Chr1	2623763	3487318	2
Inversion	Chr2	32566491	32937192	OsKitaake02g332700
Inversion	Chr2	32566496	32938670	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes