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Mutant Information

Mutant Name	FN411-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN411-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 42

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 33573106 T-C Hetero INTERGENIC
SBS Chr1 40483752 A-G Hetero INTERGENIC
SBS Chr2 9020595 C-A Homo INTRON
SBS Chr2 15496721 T-C Homo INTERGENIC
SBS Chr2 18896331 A-C Hetero INTERGENIC
SBS Chr3 17201399 C-A Hetero UTR_3_PRIME
SBS Chr3 21371041 G-A Hetero INTERGENIC
SBS Chr3 22113384 G-A Hetero INTERGENIC
SBS Chr4 4146888 C-T Hetero INTERGENIC
SBS Chr4 7592892 C-T Homo INTERGENIC
SBS Chr4 36951223 G-A Homo NON_SYNONYMOUS_CODING OsKitaake04g323500
SBS Chr5 192125 A-G Homo INTERGENIC
SBS Chr5 7724254 T-C Hetero INTRON
SBS Chr6 5821623 G-A Hetero UTR_3_PRIME
SBS Chr7 772440 G-T Homo INTERGENIC
SBS Chr7 772441 C-T Homo INTERGENIC
SBS Chr7 772461 A-T Homo INTERGENIC
SBS Chr7 4270301 G-C Hetero INTERGENIC
SBS Chr7 6081714 G-C Hetero INTERGENIC
SBS Chr7 12958671 T-C Homo INTERGENIC
SBS Chr7 12958704 A-G Homo INTERGENIC
SBS Chr7 15912537 T-C Hetero INTERGENIC
SBS Chr7 21982551 C-T Hetero INTERGENIC
SBS Chr7 28405168 G-T Hetero INTERGENIC
SBS Chr8 10313421 C-T Homo INTERGENIC
SBS Chr8 13290866 T-C Homo INTERGENIC
SBS Chr8 13429441 C-T Hetero INTRON
SBS Chr8 14184698 C-G Hetero INTERGENIC
SBS Chr9 4283682 C-G Hetero INTERGENIC
SBS Chr9 7744421 G-T Hetero INTERGENIC
SBS Chr9 10684218 A-C Hetero INTERGENIC
SBS Chr9 18389851 G-C Homo INTRON
SBS Chr9 18389852 C-A Homo INTRON
SBS Chr10 10055839 G-A Homo INTERGENIC
SBS Chr10 15220878 G-A Hetero INTERGENIC
SBS Chr11 3917179 A-T Homo INTERGENIC
SBS Chr11 11089068 G-A Homo INTERGENIC
SBS Chr11 11234848 T-G Homo INTRON
SBS Chr11 20809440 A-T Homo INTRON
SBS Chr11 21799236 C-T Homo INTERGENIC
SBS Chr11 26107492 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake11g210900
SBS Chr12 25557246 C-A Homo NON_SYNONYMOUS_CODING OsKitaake12g210000

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 1685000 1685001 1
Deletion Chr5 3957425 3957426 1
Deletion Chr8 4274987 4274996 9
Deletion Chr1 8357263 8357264 1
Deletion Chr7 13717001 13730000 12999
Deletion Chr3 16739732 16739904 172
Deletion Chr9 16939482 16939485 3
Deletion Chr1 16967269 16967271 2
Deletion Chr8 28457997 28458002 5
Deletion Chr1 31825001 31839000 13999

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr12 20781437 20781439 1
Insertion Chr3 13799627 13799629 1
Insertion Chr8 7323137 7323139 1
Insertion Chr10 8681609 8681611 1

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	33573106	T-C	Hetero	INTERGENIC
SBS	Chr1	40483752	A-G	Hetero	INTERGENIC
SBS	Chr2	9020595	C-A	Homo	INTRON
SBS	Chr2	15496721	T-C	Homo	INTERGENIC
SBS	Chr2	18896331	A-C	Hetero	INTERGENIC
SBS	Chr3	17201399	C-A	Hetero	UTR_3_PRIME
SBS	Chr3	21371041	G-A	Hetero	INTERGENIC
SBS	Chr3	22113384	G-A	Hetero	INTERGENIC
SBS	Chr4	4146888	C-T	Hetero	INTERGENIC
SBS	Chr4	7592892	C-T	Homo	INTERGENIC
SBS	Chr4	36951223	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g323500
SBS	Chr5	192125	A-G	Homo	INTERGENIC
SBS	Chr5	7724254	T-C	Hetero	INTRON
SBS	Chr6	5821623	G-A	Hetero	UTR_3_PRIME
SBS	Chr7	772440	G-T	Homo	INTERGENIC
SBS	Chr7	772441	C-T	Homo	INTERGENIC
SBS	Chr7	772461	A-T	Homo	INTERGENIC
SBS	Chr7	4270301	G-C	Hetero	INTERGENIC
SBS	Chr7	6081714	G-C	Hetero	INTERGENIC
SBS	Chr7	12958671	T-C	Homo	INTERGENIC
SBS	Chr7	12958704	A-G	Homo	INTERGENIC
SBS	Chr7	15912537	T-C	Hetero	INTERGENIC
SBS	Chr7	21982551	C-T	Hetero	INTERGENIC
SBS	Chr7	28405168	G-T	Hetero	INTERGENIC
SBS	Chr8	10313421	C-T	Homo	INTERGENIC
SBS	Chr8	13290866	T-C	Homo	INTERGENIC
SBS	Chr8	13429441	C-T	Hetero	INTRON
SBS	Chr8	14184698	C-G	Hetero	INTERGENIC
SBS	Chr9	4283682	C-G	Hetero	INTERGENIC
SBS	Chr9	7744421	G-T	Hetero	INTERGENIC
SBS	Chr9	10684218	A-C	Hetero	INTERGENIC
SBS	Chr9	18389851	G-C	Homo	INTRON
SBS	Chr9	18389852	C-A	Homo	INTRON
SBS	Chr10	10055839	G-A	Homo	INTERGENIC
SBS	Chr10	15220878	G-A	Hetero	INTERGENIC
SBS	Chr11	3917179	A-T	Homo	INTERGENIC
SBS	Chr11	11089068	G-A	Homo	INTERGENIC
SBS	Chr11	11234848	T-G	Homo	INTRON
SBS	Chr11	20809440	A-T	Homo	INTRON
SBS	Chr11	21799236	C-T	Homo	INTERGENIC
SBS	Chr11	26107492	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g210900
SBS	Chr12	25557246	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake12g210000

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	1685000	1685001	1
Deletion	Chr5	3957425	3957426	1
Deletion	Chr8	4274987	4274996	9
Deletion	Chr1	8357263	8357264	1
Deletion	Chr7	13717001	13730000	12999
Deletion	Chr3	16739732	16739904	172
Deletion	Chr9	16939482	16939485	3
Deletion	Chr1	16967269	16967271	2
Deletion	Chr8	28457997	28458002	5
Deletion	Chr1	31825001	31839000	13999

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes