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Mutant Information

Mutant Name	FN4110-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4110-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5659305 T-A Hetero INTRON
SBS Chr1 21958657 A-C Hetero INTRON
SBS Chr1 26425678 C-T Homo INTRON
SBS Chr1 37786404 C-T Homo INTERGENIC
SBS Chr1 37786405 G-T Homo INTERGENIC
SBS Chr2 27970239 C-T Hetero INTRON
SBS Chr3 33004367 A-T Hetero INTERGENIC
SBS Chr4 5259037 G-A Hetero INTERGENIC
SBS Chr4 7461221 C-T Hetero INTERGENIC
SBS Chr4 10955181 G-A Hetero INTERGENIC
SBS Chr4 10955182 G-A Hetero INTERGENIC
SBS Chr4 24190105 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake04g155600
SBS Chr4 25771924 G-T Hetero INTERGENIC
SBS Chr4 28683596 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake04g214800
SBS Chr4 34655477 T-A Hetero INTRON
SBS Chr4 36464393 C-T Hetero INTERGENIC
SBS Chr4 36792453 T-A Hetero INTRON
SBS Chr6 1142516 G-A Homo INTERGENIC
SBS Chr6 7267118 G-A Hetero INTRON
SBS Chr6 11159324 T-G Homo INTERGENIC
SBS Chr6 17778597 G-A Homo INTERGENIC
SBS Chr6 21097036 G-A Hetero INTERGENIC
SBS Chr6 27700353 A-C Homo INTERGENIC
SBS Chr7 19532438 C-T Hetero INTRON
SBS Chr8 6776100 T-C Homo INTERGENIC
SBS Chr8 16744679 C-T Hetero INTERGENIC
SBS Chr8 28514778 T-A Hetero INTERGENIC
SBS Chr9 2772283 C-T Homo INTERGENIC
SBS Chr10 14986049 C-T Hetero INTRON
SBS Chr11 13575527 T-C Hetero INTERGENIC
SBS Chr11 22657010 C-A Homo INTERGENIC
SBS Chr11 28664143 T-C Homo NON_SYNONYMOUS_CODING OsKitaake11g234800
SBS Chr12 1236500 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake12g018000
SBS Chr12 2314119 A-T Hetero INTERGENIC
SBS Chr12 4087971 A-G Homo INTERGENIC
SBS Chr12 18766028 C-A Homo INTERGENIC
SBS Chr12 19798897 G-T Hetero INTERGENIC

Deletions: 19

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 944751 944753 2
Deletion Chr4 3211258 3211259 1
Deletion Chr7 4437001 4872000 434999 41
Deletion Chr6 11150214 11150216 2
Deletion Chr6 12294871 12294877 6
Deletion Chr12 13223784 13223790 6
Deletion Chr10 13683297 13683298 1
Deletion Chr12 14485477 14485478 1
Deletion Chr12 16016874 16016886 12
Deletion Chr8 22802265 22802270 5
Deletion Chr2 24319858 24319860 2
Deletion Chr8 24447066 24447080 14
Deletion Chr3 25908976 25908980 4
Deletion Chr1 26997014 26997041 27
Deletion Chr1 27159049 27159050 1
Deletion Chr1 27905593 27905616 23
Deletion Chr1 27988214 27988215 1
Deletion Chr1 28984152 28984163 11
Deletion Chr1 37760437 37760447 10

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 17800525 17800531 5
Insertion Chr8 20306069 20306072 2
Insertion Chr9 4108049 4108054 4

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 22259487 22854436 OsKitaake01g212900
Inversion Chr1 22259491 22854444 OsKitaake01g212900

Translocations: 6

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 2250509 Chr3 35970216 2
Translocation Chr12 2250511 Chr3 35969689 2
Translocation Chr7 4433265 Chr1 38765217 OsKitaake01g414932
Translocation Chr7 4872826 Chr1 28475808 OsKitaake07g059500
Translocation Chr8 24104438 Chr3 869825 OsKitaake03g013000
Translocation Chr8 24104439 Chr3 807742 OsKitaake03g012700

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5659305	T-A	Hetero	INTRON
SBS	Chr1	21958657	A-C	Hetero	INTRON
SBS	Chr1	26425678	C-T	Homo	INTRON
SBS	Chr1	37786404	C-T	Homo	INTERGENIC
SBS	Chr1	37786405	G-T	Homo	INTERGENIC
SBS	Chr2	27970239	C-T	Hetero	INTRON
SBS	Chr3	33004367	A-T	Hetero	INTERGENIC
SBS	Chr4	5259037	G-A	Hetero	INTERGENIC
SBS	Chr4	7461221	C-T	Hetero	INTERGENIC
SBS	Chr4	10955181	G-A	Hetero	INTERGENIC
SBS	Chr4	10955182	G-A	Hetero	INTERGENIC
SBS	Chr4	24190105	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g155600
SBS	Chr4	25771924	G-T	Hetero	INTERGENIC
SBS	Chr4	28683596	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g214800
SBS	Chr4	34655477	T-A	Hetero	INTRON
SBS	Chr4	36464393	C-T	Hetero	INTERGENIC
SBS	Chr4	36792453	T-A	Hetero	INTRON
SBS	Chr6	1142516	G-A	Homo	INTERGENIC
SBS	Chr6	7267118	G-A	Hetero	INTRON
SBS	Chr6	11159324	T-G	Homo	INTERGENIC
SBS	Chr6	17778597	G-A	Homo	INTERGENIC
SBS	Chr6	21097036	G-A	Hetero	INTERGENIC
SBS	Chr6	27700353	A-C	Homo	INTERGENIC
SBS	Chr7	19532438	C-T	Hetero	INTRON
SBS	Chr8	6776100	T-C	Homo	INTERGENIC
SBS	Chr8	16744679	C-T	Hetero	INTERGENIC
SBS	Chr8	28514778	T-A	Hetero	INTERGENIC
SBS	Chr9	2772283	C-T	Homo	INTERGENIC
SBS	Chr10	14986049	C-T	Hetero	INTRON
SBS	Chr11	13575527	T-C	Hetero	INTERGENIC
SBS	Chr11	22657010	C-A	Homo	INTERGENIC
SBS	Chr11	28664143	T-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake11g234800
SBS	Chr12	1236500	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g018000
SBS	Chr12	2314119	A-T	Hetero	INTERGENIC
SBS	Chr12	4087971	A-G	Homo	INTERGENIC
SBS	Chr12	18766028	C-A	Homo	INTERGENIC
SBS	Chr12	19798897	G-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	944751	944753	2
Deletion	Chr4	3211258	3211259	1
Deletion	Chr7	4437001	4872000	434999	41
Deletion	Chr6	11150214	11150216	2
Deletion	Chr6	12294871	12294877	6
Deletion	Chr12	13223784	13223790	6
Deletion	Chr10	13683297	13683298	1
Deletion	Chr12	14485477	14485478	1
Deletion	Chr12	16016874	16016886	12
Deletion	Chr8	22802265	22802270	5
Deletion	Chr2	24319858	24319860	2
Deletion	Chr8	24447066	24447080	14
Deletion	Chr3	25908976	25908980	4
Deletion	Chr1	26997014	26997041	27
Deletion	Chr1	27159049	27159050	1
Deletion	Chr1	27905593	27905616	23
Deletion	Chr1	27988214	27988215	1
Deletion	Chr1	28984152	28984163	11
Deletion	Chr1	37760437	37760447	10

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	22259487	22854436	OsKitaake01g212900
Inversion	Chr1	22259491	22854444	OsKitaake01g212900

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes