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Mutant Information

Mutant Name	FN4111-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4111-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 32

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 29963309 C-T Homo NON_SYNONYMOUS_CODING OsKitaake01g294300
SBS Chr1 29963310 A-T Homo SYNONYMOUS_CODING
SBS Chr1 33862650 G-A Hetero INTERGENIC
SBS Chr1 44068188 G-A Hetero INTERGENIC
SBS Chr3 13562864 G-T Homo INTERGENIC
SBS Chr3 20936853 G-A Hetero INTERGENIC
SBS Chr4 667767 A-T Hetero INTRON
SBS Chr4 35130853 G-A Hetero INTRON
SBS Chr4 36754816 C-T Homo INTERGENIC
SBS Chr4 36868978 T-C Homo INTERGENIC
SBS Chr5 5344639 T-G Hetero INTERGENIC
SBS Chr6 26724378 G-T Hetero INTERGENIC
SBS Chr7 16749933 C-T Homo INTERGENIC
SBS Chr7 20816399 C-T Homo INTERGENIC
SBS Chr7 22493552 G-A Hetero UTR_3_PRIME
SBS Chr7 27459798 T-C Hetero INTERGENIC
SBS Chr8 2245762 A-G Hetero INTERGENIC
SBS Chr8 12263019 G-C Hetero INTERGENIC
SBS Chr8 22318371 C-T Homo INTERGENIC
SBS Chr9 9880608 G-A Hetero INTERGENIC
SBS Chr9 14645146 G-A Hetero INTERGENIC
SBS Chr9 15275573 C-A Hetero INTERGENIC
SBS Chr10 2216405 G-A Hetero INTERGENIC
SBS Chr10 14542519 C-A Hetero INTERGENIC
SBS Chr10 17524421 G-A Homo SYNONYMOUS_CODING
SBS Chr11 5490436 T-A Hetero INTERGENIC
SBS Chr11 6833466 A-G Homo INTERGENIC
SBS Chr11 19234431 A-T Hetero INTERGENIC
SBS Chr12 429124 C-G Hetero INTERGENIC
SBS Chr12 5857626 A-G Hetero INTERGENIC
SBS Chr12 21319780 G-A Hetero INTERGENIC
SBS Chr12 24263261 C-A Hetero INTRON

Deletions: 33

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 2061088 2061089 1 OsKitaake11g030300
Deletion Chr8 3890205 3890218 13 OsKitaake08g045301
Deletion Chr7 4138701 4138707 6
Deletion Chr7 4477492 4477502 10
Deletion Chr5 5553973 5553984 11
Deletion Chr3 5929113 5929119 6
Deletion Chr5 5932694 5932703 9
Deletion Chr12 6499029 6499042 13
Deletion Chr7 7622835 7622836 1
Deletion Chr2 7649106 7649118 12
Deletion Chr9 8653660 8653663 3
Deletion Chr5 9662375 9662376 1
Deletion Chr5 10750622 10750627 5
Deletion Chr5 12365975 12365977 2
Deletion Chr7 12559526 12559530 4
Deletion Chr10 15971544 15971551 7
Deletion Chr10 16226954 16226963 9
Deletion Chr6 16472887 16472889 2
Deletion Chr5 17533039 17533040 1
Deletion Chr10 19078823 19078830 7
Deletion Chr6 19643599 19643608 9
Deletion Chr11 22558620 22558622 2
Deletion Chr4 26358256 26358257 1
Deletion Chr5 26385554 26385555 1 OsKitaake05g233200
Deletion Chr8 26837494 26837501 7
Deletion Chr8 26845411 26845413 2
Deletion Chr7 26977001 26994000 16999 3
Deletion Chr1 27748228 27748240 12
Deletion Chr4 27815052 27815094 42
Deletion Chr6 29546954 29546960 6
Deletion Chr5 30019043 30019052 9
Deletion Chr3 32563061 32563083 22 OsKitaake03g344500
Deletion Chr1 39530173 39530178 5 OsKitaake01g426700

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 10666261 10666264 2
Insertion Chr5 29182152 29182155 2
Insertion Chr12 3196705 3196708 2
Insertion Chr2 33435361 33435366 4

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 5644070 6015427 OsKitaake08g064900
Inversion Chr8 5644076 5819423 OsKitaake08g063800
Inversion Chr10 22369230 23182409 OsKitaake10g183600
Inversion Chr10 22369241 23182410 2

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 22369241 Chr5 23106596 2
Translocation Chr10 23182411 Chr5 23106429 OsKitaake05g192501

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	29963309	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g294300
SBS	Chr1	29963310	A-T	Homo	SYNONYMOUS_CODING
SBS	Chr1	33862650	G-A	Hetero	INTERGENIC
SBS	Chr1	44068188	G-A	Hetero	INTERGENIC
SBS	Chr3	13562864	G-T	Homo	INTERGENIC
SBS	Chr3	20936853	G-A	Hetero	INTERGENIC
SBS	Chr4	667767	A-T	Hetero	INTRON
SBS	Chr4	35130853	G-A	Hetero	INTRON
SBS	Chr4	36754816	C-T	Homo	INTERGENIC
SBS	Chr4	36868978	T-C	Homo	INTERGENIC
SBS	Chr5	5344639	T-G	Hetero	INTERGENIC
SBS	Chr6	26724378	G-T	Hetero	INTERGENIC
SBS	Chr7	16749933	C-T	Homo	INTERGENIC
SBS	Chr7	20816399	C-T	Homo	INTERGENIC
SBS	Chr7	22493552	G-A	Hetero	UTR_3_PRIME
SBS	Chr7	27459798	T-C	Hetero	INTERGENIC
SBS	Chr8	2245762	A-G	Hetero	INTERGENIC
SBS	Chr8	12263019	G-C	Hetero	INTERGENIC
SBS	Chr8	22318371	C-T	Homo	INTERGENIC
SBS	Chr9	9880608	G-A	Hetero	INTERGENIC
SBS	Chr9	14645146	G-A	Hetero	INTERGENIC
SBS	Chr9	15275573	C-A	Hetero	INTERGENIC
SBS	Chr10	2216405	G-A	Hetero	INTERGENIC
SBS	Chr10	14542519	C-A	Hetero	INTERGENIC
SBS	Chr10	17524421	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr11	5490436	T-A	Hetero	INTERGENIC
SBS	Chr11	6833466	A-G	Homo	INTERGENIC
SBS	Chr11	19234431	A-T	Hetero	INTERGENIC
SBS	Chr12	429124	C-G	Hetero	INTERGENIC
SBS	Chr12	5857626	A-G	Hetero	INTERGENIC
SBS	Chr12	21319780	G-A	Hetero	INTERGENIC
SBS	Chr12	24263261	C-A	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	2061088	2061089	1	OsKitaake11g030300
Deletion	Chr8	3890205	3890218	13	OsKitaake08g045301
Deletion	Chr7	4138701	4138707	6
Deletion	Chr7	4477492	4477502	10
Deletion	Chr5	5553973	5553984	11
Deletion	Chr3	5929113	5929119	6
Deletion	Chr5	5932694	5932703	9
Deletion	Chr12	6499029	6499042	13
Deletion	Chr7	7622835	7622836	1
Deletion	Chr2	7649106	7649118	12
Deletion	Chr9	8653660	8653663	3
Deletion	Chr5	9662375	9662376	1
Deletion	Chr5	10750622	10750627	5
Deletion	Chr5	12365975	12365977	2
Deletion	Chr7	12559526	12559530	4
Deletion	Chr10	15971544	15971551	7
Deletion	Chr10	16226954	16226963	9
Deletion	Chr6	16472887	16472889	2
Deletion	Chr5	17533039	17533040	1
Deletion	Chr10	19078823	19078830	7
Deletion	Chr6	19643599	19643608	9
Deletion	Chr11	22558620	22558622	2
Deletion	Chr4	26358256	26358257	1
Deletion	Chr5	26385554	26385555	1	OsKitaake05g233200
Deletion	Chr8	26837494	26837501	7
Deletion	Chr8	26845411	26845413	2
Deletion	Chr7	26977001	26994000	16999	3
Deletion	Chr1	27748228	27748240	12
Deletion	Chr4	27815052	27815094	42
Deletion	Chr6	29546954	29546960	6
Deletion	Chr5	30019043	30019052	9
Deletion	Chr3	32563061	32563083	22	OsKitaake03g344500
Deletion	Chr1	39530173	39530178	5	OsKitaake01g426700

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	5644070	6015427	OsKitaake08g064900
Inversion	Chr8	5644076	5819423	OsKitaake08g063800
Inversion	Chr10	22369230	23182409	OsKitaake10g183600
Inversion	Chr10	22369241	23182410	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes