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| Mutant Information |
|---|
| Mutant Name | FN4112-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4112-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 30
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 2904220 | G-C | Homo | NON_SYNONYMOUS_CODING | OsKitaake01g037400 |
| SBS | Chr1 | 10994489 | A-T | Hetero | INTRON | |
| SBS | Chr1 | 20391711 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 43999859 | G-A | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr2 | 20994700 | A-G | Homo | INTERGENIC | |
| SBS | Chr3 | 33269873 | T-A | Homo | INTRON | |
| SBS | Chr3 | 37123108 | G-A | Homo | INTRON | |
| SBS | Chr4 | 18138879 | A-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 19290574 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 20609884 | A-G | Homo | INTRON | |
| SBS | Chr4 | 27697328 | T-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 35390085 | A-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 35390086 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 1399353 | T-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 3946815 | A-C | Hetero | INTRON | |
| SBS | Chr6 | 9446585 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 11413600 | G-T | Hetero | INTRON | |
| SBS | Chr6 | 18456894 | C-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 26425000 | T-A | Homo | INTRON | |
| SBS | Chr7 | 1322807 | G-A | Homo | INTERGENIC | |
| SBS | Chr7 | 12238191 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 28680443 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 6242958 | G-A | Hetero | INTRON | |
| SBS | Chr9 | 252744 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 2648251 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 5194967 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 15411476 | T-C | Hetero | INTERGENIC | |
| SBS | Chr10 | 10797745 | A-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 15849116 | C-T | Hetero | INTRON | |
| SBS | Chr12 | 12318335 | C-T | Hetero | INTERGENIC |
Deletions: 13
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr11 | 668852 | 668853 | 1 | |
| Deletion | Chr5 | 3148863 | 3148866 | 3 | OsKitaake05g037700 |
| Deletion | Chr2 | 6028435 | 6028436 | 1 | |
| Deletion | Chr11 | 9023075 | 9023076 | 1 | |
| Deletion | Chr5 | 10304566 | 10304567 | 1 | |
| Deletion | Chr7 | 11792613 | 11792624 | 11 | |
| Deletion | Chr10 | 16256634 | 16256646 | 12 | |
| Deletion | Chr2 | 16362401 | 16362412 | 11 | |
| Deletion | Chr4 | 20804112 | 20804114 | 2 | |
| Deletion | Chr4 | 21061288 | 21061303 | 15 | |
| Deletion | Chr1 | 21641315 | 21641317 | 2 | |
| Deletion | Chr1 | 29853303 | 29853313 | 10 | |
| Deletion | Chr3 | 36487222 | 36487234 | 12 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr10 | 14190881 | 14190883 | 1 |
Inversions: 3
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr5 | 2876781 | 3837128 | OsKitaake05g046000 |
| Inversion | Chr5 | 2876791 | 3837131 | OsKitaake05g046000 |
| Inversion | Chr10 | 11280958 | 11927351 |