Search Kitaake
| Mutant Information |
|---|
| Mutant Name | FN4113-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4113-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 28
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 1254529 | A-G | Homo | INTERGENIC | |
| SBS | Chr1 | 4454750 | C-T | Homo | INTERGENIC | |
| SBS | Chr1 | 14462314 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 32177117 | G-A | Hetero | INTRON | |
| SBS | Chr2 | 7052475 | C-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 24286802 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 17429930 | T-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 32665774 | A-T | Hetero | INTRON | |
| SBS | Chr4 | 10987797 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 27530815 | A-C | Homo | INTERGENIC | |
| SBS | Chr4 | 36763824 | T-C | Hetero | INTRON | |
| SBS | Chr5 | 6123250 | A-T | Homo | INTRON | |
| SBS | Chr5 | 17510245 | A-G | Homo | INTERGENIC | |
| SBS | Chr6 | 2466160 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 5634764 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 10692410 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 11980467 | T-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 21777912 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 3648218 | C-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 24174570 | T-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 11783692 | C-A | Homo | INTERGENIC | |
| SBS | Chr9 | 954229 | C-T | Homo | INTRON | |
| SBS | Chr11 | 3735050 | G-T | Homo | INTRON | |
| SBS | Chr11 | 10937810 | A-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 15378761 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 21379752 | T-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 23521800 | C-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 17065854 | G-A | Homo | INTERGENIC |
Deletions: 22
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr5 | 375163 | 375167 | 4 | |
| Deletion | Chr5 | 2093782 | 2093784 | 2 | |
| Deletion | Chr5 | 3030911 | 3030915 | 4 | |
| Deletion | Chr12 | 7184555 | 7184558 | 3 | |
| Deletion | Chr1 | 7376402 | 7376403 | 1 | OsKitaake01g092200 |
| Deletion | Chr2 | 8219998 | 8220001 | 3 | OsKitaake02g105000 |
| Deletion | Chr1 | 10001452 | 10001456 | 4 | |
| Deletion | Chr6 | 13625076 | 13625108 | 32 | |
| Deletion | Chr5 | 14335414 | 14335419 | 5 | |
| Deletion | Chr10 | 15800718 | 15800719 | 1 | |
| Deletion | Chr4 | 18761797 | 18761808 | 11 | |
| Deletion | Chr3 | 19129414 | 19129419 | 5 | |
| Deletion | Chr7 | 21442438 | 21442445 | 7 | |
| Deletion | Chr11 | 22684699 | 22684705 | 6 | |
| Deletion | Chr3 | 23551105 | 23551109 | 4 | |
| Deletion | Chr3 | 24116785 | 24116798 | 13 | |
| Deletion | Chr8 | 24747779 | 24747783 | 4 | |
| Deletion | Chr12 | 25677770 | 25677771 | 1 | |
| Deletion | Chr4 | 26017558 | 26017564 | 6 | OsKitaake04g182600 |
| Deletion | Chr2 | 28713106 | 28713109 | 3 | |
| Deletion | Chr4 | 29738689 | 29738708 | 19 | |
| Deletion | Chr4 | 32450001 | 32478000 | 27999 | 3 |
Insertions: 5
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr1 | 39060283 | 39127600 | OsKitaake01g419100 |
| Inversion | Chr1 | 39127726 | 39520697 |