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| Mutant Information |
|---|
| Mutant Name | FN4114-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4114-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 35
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 8748045 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 16484590 | A-G | Homo | INTERGENIC | |
| SBS | Chr1 | 24974414 | T-A | Homo | INTERGENIC | |
| SBS | Chr1 | 24974420 | A-T | Homo | INTERGENIC | |
| SBS | Chr1 | 30627101 | G-A | Homo | INTERGENIC | |
| SBS | Chr1 | 31515274 | C-T | Homo | INTERGENIC | |
| SBS | Chr1 | 38338962 | A-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 10926632 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 24832687 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake02g247500 |
| SBS | Chr2 | 24832688 | C-A | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr3 | 14426214 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 3903206 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 6961246 | A-G | Homo | INTERGENIC | |
| SBS | Chr4 | 7366406 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 24920075 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 30296042 | T-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 2258284 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 3785416 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 24377787 | T-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 25157991 | T-A | Hetero | INTRON | |
| SBS | Chr6 | 25341190 | C-T | Homo | SYNONYMOUS_CODING | |
| SBS | Chr6 | 25603855 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 942587 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake07g012100 |
| SBS | Chr7 | 6510902 | G-A | Hetero | INTRON | |
| SBS | Chr8 | 7112167 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 10446933 | T-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 18534620 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 1676150 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 16491229 | A-G | Hetero | INTERGENIC | |
| SBS | Chr10 | 291029 | G-A | Homo | SYNONYMOUS_CODING | |
| SBS | Chr11 | 5224987 | C-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 8707768 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 8894181 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 5913896 | C-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 6020243 | A-T | Hetero | INTERGENIC |
Deletions: 7
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr2 | 2259945 | 2259949 | 4 | |
| Deletion | Chr12 | 4164001 | 4459000 | 294999 | 30 |
| Deletion | Chr6 | 5978811 | 5978812 | 1 | |
| Deletion | Chr4 | 9158229 | 9158231 | 2 | OsKitaake04g047100 |
| Deletion | Chr8 | 9727557 | 9727559 | 2 | |
| Deletion | Chr2 | 30086236 | 30086242 | 6 | |
| Deletion | Chr1 | 39184951 | 39184956 | 5 | OsKitaake01g421000 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr4 | 9574522 | 9574524 | 1 |
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr10 | 8611381 | Chr8 | 19292009 |