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| Mutant Information |
|---|
| Mutant Name | FN4116-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4116-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 36
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 2741714 | T-A | Homo | INTRON | |
| SBS | Chr1 | 16371221 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 21053455 | G-A | Hetero | INTRON | |
| SBS | Chr1 | 36511934 | G-A | Homo | SYNONYMOUS_CODING | |
| SBS | Chr2 | 3500109 | G-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 21308217 | A-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 27110222 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 13720961 | C-G | Homo | INTERGENIC | |
| SBS | Chr3 | 13730674 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 25072767 | T-A | Homo | INTERGENIC | |
| SBS | Chr4 | 3692183 | T-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 9085545 | A-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 22006691 | T-A | Homo | INTRON | |
| SBS | Chr6 | 2662450 | G-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 7911459 | A-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 7914708 | G-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 18106203 | G-A | Hetero | INTRON | |
| SBS | Chr7 | 19803831 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 2122202 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 28717010 | T-G | Hetero | INTRON | |
| SBS | Chr9 | 1350563 | A-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 6736522 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 6736523 | G-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 8741268 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 15120831 | G-A | Homo | INTERGENIC | |
| SBS | Chr10 | 891434 | A-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 1176698 | C-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 10097763 | T-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 10097764 | G-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 11167776 | C-T | Homo | INTERGENIC | |
| SBS | Chr11 | 11503379 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 25313429 | A-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 10285245 | T-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 16111998 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 19266128 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 21401923 | G-A | Homo | INTERGENIC |
Deletions: 18
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr2 | 1543101 | 1543106 | 5 | OsKitaake02g024150 |
| Deletion | Chr7 | 7626435 | 7626444 | 9 | |
| Deletion | Chr3 | 8587113 | 8587114 | 1 | |
| Deletion | Chr12 | 11660622 | 11660777 | 155 | |
| Deletion | Chr6 | 13671001 | 13756000 | 84999 | 6 |
| Deletion | Chr3 | 13714636 | 13714637 | 1 | |
| Deletion | Chr8 | 16076730 | 16076755 | 25 | |
| Deletion | Chr8 | 16256700 | 16256701 | 1 | |
| Deletion | Chr2 | 16920918 | 16920924 | 6 | |
| Deletion | Chr6 | 19525231 | 19525240 | 9 | |
| Deletion | Chr11 | 20127935 | 20127936 | 1 | |
| Deletion | Chr10 | 20867925 | 20867927 | 2 | |
| Deletion | Chr11 | 23694409 | 23694411 | 2 | |
| Deletion | Chr8 | 24148064 | 24148065 | 1 | |
| Deletion | Chr4 | 25734641 | 25734644 | 3 | |
| Deletion | Chr12 | 26594465 | 26594466 | 1 | |
| Deletion | Chr2 | 26640001 | 26696000 | 55999 | 7 |
| Deletion | Chr1 | 36516518 | 36516530 | 12 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 17625048 | 17625051 | 2 | |
| Insertion | Chr1 | 38073974 | 38073976 | 1 | OsKitaake01g405900  |
| Insertion | Chr7 | 4036415 | 4036418 | 2 |
Inversions: 3
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr12 | 2641506 | 3003373 | OsKitaake12g038900 |
| Inversion | Chr3 | 32381764 | 32607127 | OsKitaake03g342800 |
| Inversion | Chr3 | 32381806 | 32607138 | OsKitaake03g342800 |
Translocations: 4
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr12 | 1727759 | Chr4 | 14091058 | OsKitaake12g026100 |
| Translocation | Chr12 | 4528326 | Chr4 | 9645410 | |
| Translocation | Chr8 | 22687927 | Chr6 | 6110018 | |
| Translocation | Chr8 | 22688142 | Chr6 | 6110016 |