Search Kitaake

Mutant Information

Mutant Name	FN4117-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4117-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 35

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3778249 G-T Hetero INTERGENIC
SBS Chr1 7477530 A-C Hetero UTR_3_PRIME
SBS Chr1 30738545 T-C Hetero INTERGENIC
SBS Chr1 31235089 G-A Homo INTERGENIC
SBS Chr2 4094370 C-T Homo INTRON
SBS Chr2 21225835 C-T Homo INTERGENIC
SBS Chr3 1543249 T-C Homo INTERGENIC
SBS Chr3 3784760 A-T Homo INTERGENIC
SBS Chr3 23201499 G-T Hetero INTERGENIC
SBS Chr3 31492634 A-C Hetero INTERGENIC
SBS Chr4 18860874 C-G Hetero INTERGENIC
SBS Chr4 36613652 C-T Homo INTERGENIC
SBS Chr5 4700776 T-A Homo INTERGENIC
SBS Chr5 5449972 G-C Homo INTERGENIC
SBS Chr5 6429367 T-C Homo INTERGENIC
SBS Chr6 9872941 A-G Homo INTERGENIC
SBS Chr6 10810443 G-T Hetero INTERGENIC
SBS Chr6 17955978 C-T Homo INTRON
SBS Chr6 19727385 C-T Homo INTERGENIC
SBS Chr6 24934171 C-A Homo INTERGENIC
SBS Chr6 27692180 C-T Hetero INTERGENIC
SBS Chr7 9541065 A-T Homo INTERGENIC
SBS Chr7 11887926 C-T Homo INTRON
SBS Chr7 29110755 C-T Homo INTERGENIC
SBS Chr8 14695852 G-T Homo INTERGENIC
SBS Chr8 21457870 A-G Hetero INTERGENIC
SBS Chr9 6802587 G-A Hetero INTRON
SBS Chr9 7427855 G-A Hetero INTERGENIC
SBS Chr9 11493272 G-A Homo INTRON
SBS Chr9 12659334 T-G Homo INTERGENIC
SBS Chr11 9679025 T-A Hetero INTERGENIC
SBS Chr12 3355351 T-C Hetero INTERGENIC
SBS Chr12 13915786 C-A Hetero INTERGENIC
SBS Chr12 16554796 C-A Homo INTERGENIC
SBS Chr12 25787769 G-T Hetero UTR_3_PRIME

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 52182 52184 2
Deletion Chr7 6076132 6076140 8
Deletion Chr3 7112954 7112964 10
Deletion Chr9 8779925 8780016 91
Deletion Chr3 11414012 11414020 8
Deletion Chr8 12845098 12845099 1
Deletion Chr8 19368470 19368472 2
Deletion Chr6 19461972 19461973 1
Deletion Chr6 20371340 20371351 11
Deletion Chr6 21251142 21251143 1
Deletion Chr7 24485856 24485858 2
Deletion Chr3 37550110 37550126 16

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr11 7137989 7137992 2

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr4 16682197 Chr1 22874933 OsKitaake04g081900
Translocation Chr4 16682633 Chr1 22874930 OsKitaake04g081900

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3778249	G-T	Hetero	INTERGENIC
SBS	Chr1	7477530	A-C	Hetero	UTR_3_PRIME
SBS	Chr1	30738545	T-C	Hetero	INTERGENIC
SBS	Chr1	31235089	G-A	Homo	INTERGENIC
SBS	Chr2	4094370	C-T	Homo	INTRON
SBS	Chr2	21225835	C-T	Homo	INTERGENIC
SBS	Chr3	1543249	T-C	Homo	INTERGENIC
SBS	Chr3	3784760	A-T	Homo	INTERGENIC
SBS	Chr3	23201499	G-T	Hetero	INTERGENIC
SBS	Chr3	31492634	A-C	Hetero	INTERGENIC
SBS	Chr4	18860874	C-G	Hetero	INTERGENIC
SBS	Chr4	36613652	C-T	Homo	INTERGENIC
SBS	Chr5	4700776	T-A	Homo	INTERGENIC
SBS	Chr5	5449972	G-C	Homo	INTERGENIC
SBS	Chr5	6429367	T-C	Homo	INTERGENIC
SBS	Chr6	9872941	A-G	Homo	INTERGENIC
SBS	Chr6	10810443	G-T	Hetero	INTERGENIC
SBS	Chr6	17955978	C-T	Homo	INTRON
SBS	Chr6	19727385	C-T	Homo	INTERGENIC
SBS	Chr6	24934171	C-A	Homo	INTERGENIC
SBS	Chr6	27692180	C-T	Hetero	INTERGENIC
SBS	Chr7	9541065	A-T	Homo	INTERGENIC
SBS	Chr7	11887926	C-T	Homo	INTRON
SBS	Chr7	29110755	C-T	Homo	INTERGENIC
SBS	Chr8	14695852	G-T	Homo	INTERGENIC
SBS	Chr8	21457870	A-G	Hetero	INTERGENIC
SBS	Chr9	6802587	G-A	Hetero	INTRON
SBS	Chr9	7427855	G-A	Hetero	INTERGENIC
SBS	Chr9	11493272	G-A	Homo	INTRON
SBS	Chr9	12659334	T-G	Homo	INTERGENIC
SBS	Chr11	9679025	T-A	Hetero	INTERGENIC
SBS	Chr12	3355351	T-C	Hetero	INTERGENIC
SBS	Chr12	13915786	C-A	Hetero	INTERGENIC
SBS	Chr12	16554796	C-A	Homo	INTERGENIC
SBS	Chr12	25787769	G-T	Hetero	UTR_3_PRIME

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	52182	52184	2
Deletion	Chr7	6076132	6076140	8
Deletion	Chr3	7112954	7112964	10
Deletion	Chr9	8779925	8780016	91
Deletion	Chr3	11414012	11414020	8
Deletion	Chr8	12845098	12845099	1
Deletion	Chr8	19368470	19368472	2
Deletion	Chr6	19461972	19461973	1
Deletion	Chr6	20371340	20371351	11
Deletion	Chr6	21251142	21251143	1
Deletion	Chr7	24485856	24485858	2
Deletion	Chr3	37550110	37550126	16

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr4	16682197	Chr1	22874933	OsKitaake04g081900
Translocation	Chr4	16682633	Chr1	22874930	OsKitaake04g081900

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes