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Mutant Information

Mutant Name	FN4119-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4119-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2006064 C-T Homo INTERGENIC
SBS Chr1 8632917 C-T Hetero INTERGENIC
SBS Chr1 8632918 A-T Hetero INTERGENIC
SBS Chr1 9723358 T-A Hetero INTERGENIC
SBS Chr1 9723359 G-A Hetero INTERGENIC
SBS Chr1 10852403 A-T Hetero INTERGENIC
SBS Chr2 10182974 A-T Homo INTERGENIC
SBS Chr2 11817344 T-C Homo INTRON
SBS Chr2 25680270 T-G Homo NON_SYNONYMOUS_CODING OsKitaake02g253900
SBS Chr2 29692425 C-T Homo INTRON
SBS Chr3 10167328 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g139200
SBS Chr4 4605616 G-T Homo INTERGENIC
SBS Chr4 10823001 C-T Homo INTERGENIC
SBS Chr4 24508794 A-T Homo INTERGENIC
SBS Chr5 12168616 C-T Hetero INTERGENIC
SBS Chr5 28176497 T-C Hetero UTR_5_PRIME
SBS Chr5 30080556 C-T Hetero INTRON
SBS Chr7 6885781 G-T Hetero INTERGENIC
SBS Chr7 6885782 A-T Hetero INTERGENIC
SBS Chr7 28869913 T-A Homo INTERGENIC
SBS Chr7 29495205 T-C Homo UTR_3_PRIME
SBS Chr8 19152281 G-A Homo INTERGENIC
SBS Chr9 804647 G-C Homo INTERGENIC
SBS Chr9 20821036 C-A Homo INTERGENIC
SBS Chr10 17798225 C-T Homo INTERGENIC
SBS Chr10 20191445 C-T Homo INTERGENIC
SBS Chr11 19170516 G-T Hetero INTERGENIC
SBS Chr11 19174100 T-A Hetero INTERGENIC
SBS Chr11 19213811 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake11g149000
SBS Chr11 23670609 T-C Hetero INTRON
SBS Chr11 27213317 C-T Hetero INTRON
SBS Chr12 15051509 C-G Homo INTERGENIC
SBS Chr12 18545690 G-T Homo NON_SYNONYMOUS_CODING OsKitaake12g135500
SBS Chr12 25319912 T-C Homo SPLICE_SITE_REGION

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 4599028 4599030 2
Deletion Chr5 12424107 12424108 1
Deletion Chr8 19769308 19769310 2
Deletion Chr12 20761284 20761297 13
Deletion Chr11 24852001 24906000 53999 6
Deletion Chr11 25396001 25523000 126999 14
Deletion Chr3 27005125 27005136 11
Deletion Chr8 29191927 29191928 1
Deletion Chr2 29431343 29431345 2

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 24005733 24005737 3
Insertion Chr1 37108282 37108286 3

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 6782364 7190786
Inversion Chr10 6782371 7190791
Inversion Chr10 13079324 13083372
Inversion Chr10 13079334 13083380

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 25712374 Chr10 8093535 OsKitaake10g051200
Translocation Chr11 25734080 Chr10 8093528 OsKitaake10g051200

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2006064	C-T	Homo	INTERGENIC
SBS	Chr1	8632917	C-T	Hetero	INTERGENIC
SBS	Chr1	8632918	A-T	Hetero	INTERGENIC
SBS	Chr1	9723358	T-A	Hetero	INTERGENIC
SBS	Chr1	9723359	G-A	Hetero	INTERGENIC
SBS	Chr1	10852403	A-T	Hetero	INTERGENIC
SBS	Chr2	10182974	A-T	Homo	INTERGENIC
SBS	Chr2	11817344	T-C	Homo	INTRON
SBS	Chr2	25680270	T-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g253900
SBS	Chr2	29692425	C-T	Homo	INTRON
SBS	Chr3	10167328	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g139200
SBS	Chr4	4605616	G-T	Homo	INTERGENIC
SBS	Chr4	10823001	C-T	Homo	INTERGENIC
SBS	Chr4	24508794	A-T	Homo	INTERGENIC
SBS	Chr5	12168616	C-T	Hetero	INTERGENIC
SBS	Chr5	28176497	T-C	Hetero	UTR_5_PRIME
SBS	Chr5	30080556	C-T	Hetero	INTRON
SBS	Chr7	6885781	G-T	Hetero	INTERGENIC
SBS	Chr7	6885782	A-T	Hetero	INTERGENIC
SBS	Chr7	28869913	T-A	Homo	INTERGENIC
SBS	Chr7	29495205	T-C	Homo	UTR_3_PRIME
SBS	Chr8	19152281	G-A	Homo	INTERGENIC
SBS	Chr9	804647	G-C	Homo	INTERGENIC
SBS	Chr9	20821036	C-A	Homo	INTERGENIC
SBS	Chr10	17798225	C-T	Homo	INTERGENIC
SBS	Chr10	20191445	C-T	Homo	INTERGENIC
SBS	Chr11	19170516	G-T	Hetero	INTERGENIC
SBS	Chr11	19174100	T-A	Hetero	INTERGENIC
SBS	Chr11	19213811	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g149000
SBS	Chr11	23670609	T-C	Hetero	INTRON
SBS	Chr11	27213317	C-T	Hetero	INTRON
SBS	Chr12	15051509	C-G	Homo	INTERGENIC
SBS	Chr12	18545690	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake12g135500
SBS	Chr12	25319912	T-C	Homo	SPLICE_SITE_REGION

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	4599028	4599030	2
Deletion	Chr5	12424107	12424108	1
Deletion	Chr8	19769308	19769310	2
Deletion	Chr12	20761284	20761297	13
Deletion	Chr11	24852001	24906000	53999	6
Deletion	Chr11	25396001	25523000	126999	14
Deletion	Chr3	27005125	27005136	11
Deletion	Chr8	29191927	29191928	1
Deletion	Chr2	29431343	29431345	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	6782364	7190786
Inversion	Chr10	6782371	7190791
Inversion	Chr10	13079324	13083372
Inversion	Chr10	13079334	13083380

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes