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Mutant Information

Mutant Name	FN412-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN412-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 29

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 25610025 C-T Hetero INTERGENIC
SBS Chr1 30431432 A-T Hetero INTERGENIC
SBS Chr1 30579585 G-A Homo INTRON
SBS Chr3 30522397 C-A Homo INTERGENIC
SBS Chr3 31145641 T-A Homo INTERGENIC
SBS Chr4 4132870 G-A Hetero INTERGENIC
SBS Chr4 10051870 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake04g053900
SBS Chr4 10304055 A-G Hetero INTERGENIC
SBS Chr4 13370161 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake04g064100
SBS Chr4 27089267 C-T Hetero INTERGENIC
SBS Chr4 30857581 A-G Hetero INTRON
SBS Chr5 2913708 G-A Hetero INTRON
SBS Chr6 3903792 A-T Homo INTRON
SBS Chr6 23668216 A-T Hetero INTERGENIC
SBS Chr7 21365422 T-A Homo INTERGENIC
SBS Chr7 23879361 A-G Hetero INTERGENIC
SBS Chr7 25241987 G-A Hetero INTERGENIC
SBS Chr7 26229232 T-A Hetero INTRON
SBS Chr7 27964390 T-C Hetero INTRON
SBS Chr8 3962952 T-A Hetero INTRON
SBS Chr8 23399250 A-G Homo INTERGENIC
SBS Chr9 5673438 T-G Hetero INTERGENIC
SBS Chr9 19134405 G-A Homo INTRON
SBS Chr10 19115878 T-C Homo INTRON
SBS Chr10 21689692 A-G Hetero INTRON
SBS Chr11 8553013 T-A Hetero INTERGENIC
SBS Chr11 28776152 A-G Homo INTERGENIC
SBS Chr12 14083625 C-T Hetero INTERGENIC
SBS Chr12 20695698 C-G Hetero INTRON

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 2085955 2085963 8
Deletion Chr7 12917827 12917912 85
Deletion Chr3 13600699 13600708 9
Deletion Chr2 14644707 14644711 4
Deletion Chr7 17270838 17270930 92
Deletion Chr2 19302356 19302359 3
Deletion Chr8 21256772 21256773 1
Deletion Chr12 25091681 25091682 1 OsKitaake12g203400
Deletion Chr11 26692277 26692279 2

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 8660300 8660303 2
Insertion Chr3 25227885 25227888 2
Insertion Chr3 35079572 35079575 2
Insertion Chr5 821856 821859 2
Insertion Chr10 2385049 2385057 7

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr3 22622498 Chr1 39798636 2
Translocation Chr3 22623878 Chr1 39798640 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	25610025	C-T	Hetero	INTERGENIC
SBS	Chr1	30431432	A-T	Hetero	INTERGENIC
SBS	Chr1	30579585	G-A	Homo	INTRON
SBS	Chr3	30522397	C-A	Homo	INTERGENIC
SBS	Chr3	31145641	T-A	Homo	INTERGENIC
SBS	Chr4	4132870	G-A	Hetero	INTERGENIC
SBS	Chr4	10051870	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g053900
SBS	Chr4	10304055	A-G	Hetero	INTERGENIC
SBS	Chr4	13370161	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g064100
SBS	Chr4	27089267	C-T	Hetero	INTERGENIC
SBS	Chr4	30857581	A-G	Hetero	INTRON
SBS	Chr5	2913708	G-A	Hetero	INTRON
SBS	Chr6	3903792	A-T	Homo	INTRON
SBS	Chr6	23668216	A-T	Hetero	INTERGENIC
SBS	Chr7	21365422	T-A	Homo	INTERGENIC
SBS	Chr7	23879361	A-G	Hetero	INTERGENIC
SBS	Chr7	25241987	G-A	Hetero	INTERGENIC
SBS	Chr7	26229232	T-A	Hetero	INTRON
SBS	Chr7	27964390	T-C	Hetero	INTRON
SBS	Chr8	3962952	T-A	Hetero	INTRON
SBS	Chr8	23399250	A-G	Homo	INTERGENIC
SBS	Chr9	5673438	T-G	Hetero	INTERGENIC
SBS	Chr9	19134405	G-A	Homo	INTRON
SBS	Chr10	19115878	T-C	Homo	INTRON
SBS	Chr10	21689692	A-G	Hetero	INTRON
SBS	Chr11	8553013	T-A	Hetero	INTERGENIC
SBS	Chr11	28776152	A-G	Homo	INTERGENIC
SBS	Chr12	14083625	C-T	Hetero	INTERGENIC
SBS	Chr12	20695698	C-G	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	2085955	2085963	8
Deletion	Chr7	12917827	12917912	85
Deletion	Chr3	13600699	13600708	9
Deletion	Chr2	14644707	14644711	4
Deletion	Chr7	17270838	17270930	92
Deletion	Chr2	19302356	19302359	3
Deletion	Chr8	21256772	21256773	1
Deletion	Chr12	25091681	25091682	1	OsKitaake12g203400
Deletion	Chr11	26692277	26692279	2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr3	22622498	Chr1	39798636	2
Translocation	Chr3	22623878	Chr1	39798640	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes