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| Mutant Information |
|---|
| Mutant Name | FN4120-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4120-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 28
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 8018586 | C-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake01g100400 |
| SBS | Chr2 | 12879804 | A-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 12919777 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 33471819 | A-T | Homo | INTRON | |
| SBS | Chr3 | 11191206 | G-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 15386569 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 20560359 | C-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 30720581 | T-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 3006764 | A-T | Homo | INTERGENIC | |
| SBS | Chr4 | 3006766 | G-T | Homo | INTERGENIC | |
| SBS | Chr4 | 14716936 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 17518179 | A-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 10359059 | C-T | Homo | INTERGENIC | |
| SBS | Chr6 | 18776249 | C-T | Hetero | INTRON | |
| SBS | Chr6 | 20070849 | T-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 20845562 | T-A | Hetero | UTR_3_PRIME | |
| SBS | Chr7 | 21204974 | C-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 5257743 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 2279720 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 7475547 | A-C | Hetero | INTERGENIC | |
| SBS | Chr10 | 9707822 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 8334747 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 10082827 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 12041909 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 13229760 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 25499405 | A-G | Homo | INTERGENIC | |
| SBS | Chr11 | 27524938 | G-C | Hetero | UTR_3_PRIME | |
| SBS | Chr11 | 27721685 | G-A | Hetero | INTRON |
Deletions: 18
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr4 | 182494 | 182503 | 9 | |
| Deletion | Chr2 | 9192096 | 9192100 | 4 | |
| Deletion | Chr3 | 9609912 | 9609924 | 12 | OsKitaake03g130600 |
| Deletion | Chr12 | 9694001 | 9744000 | 49999 | 5 |
| Deletion | Chr12 | 9749001 | 9775000 | 25999 | |
| Deletion | Chr9 | 12469388 | 12469401 | 13 | |
| Deletion | Chr6 | 12726922 | 12726925 | 3 | |
| Deletion | Chr10 | 17262001 | 17453000 | 190999 | 8 |
| Deletion | Chr5 | 18493727 | 18493733 | 6 | |
| Deletion | Chr12 | 18757001 | 18848000 | 90999 | OsKitaake12g138700 |
| Deletion | Chr2 | 19884755 | 19884757 | 2 | |
| Deletion | Chr11 | 19918498 | 19918499 | 1 | |
| Deletion | Chr3 | 24479821 | 24479827 | 6 | |
| Deletion | Chr1 | 27599001 | 27634000 | 34999 | 2 |
| Deletion | Chr5 | 29198754 | 29198755 | 1 | |
| Deletion | Chr11 | 29318363 | 29318454 | 91 | |
| Deletion | Chr1 | 31240422 | 31240427 | 5 | |
| Deletion | Chr2 | 32632293 | 32632300 | 7 | OsKitaake02g333900 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr2 | 1347710 | 1347713 | 2 | |
| Insertion | Chr11 | 19899294 | 19899297 | 2 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr2 | 24455429 | 25268121 | OsKitaake02g248800 |
| Inversion | Chr2 | 24455438 | 25268124 | OsKitaake02g248800 |
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr12 | 18847329 | Chr11 | 13728825 |