Search Kitaake

Mutant Information

Mutant Name	FN4121-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4121-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 18

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 27016533 C-T Homo NON_SYNONYMOUS_CODING OsKitaake01g262500
SBS Chr1 29948301 C-T Hetero INTERGENIC
SBS Chr2 323649 A-T Homo INTERGENIC
SBS Chr2 9794444 A-T Homo INTERGENIC
SBS Chr4 4015826 G-A Homo NON_SYNONYMOUS_CODING OsKitaake04g019500
SBS Chr4 10237104 C-T Homo INTERGENIC
SBS Chr5 18682437 G-A Hetero INTERGENIC
SBS Chr7 5376781 C-T Homo INTERGENIC
SBS Chr7 16423450 C-G Hetero INTRON
SBS Chr8 10720203 C-A Homo INTERGENIC
SBS Chr8 13143101 T-A Homo INTRON
SBS Chr9 12316027 A-T Hetero INTERGENIC
SBS Chr9 12429147 C-A Homo INTERGENIC
SBS Chr11 12020397 T-A Homo INTRON
SBS Chr11 24383939 T-G Homo INTERGENIC
SBS Chr12 16857633 C-T Hetero INTERGENIC
SBS Chr12 24990659 C-T Hetero INTERGENIC
SBS Chr12 25915779 G-T Hetero INTERGENIC

Deletions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 1361540 1361542 2
Deletion Chr8 3336937 3336941 4
Deletion Chr11 14521441 14521452 11
Deletion Chr6 15140266 15140273 7
Deletion Chr11 20284266 20284272 6 OsKitaake11g158500
Deletion Chr7 24382289 24382291 2
Deletion Chr5 24742351 24742352 1
Deletion Chr2 35332312 35332322 10

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 9692959 9692961 1

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	27016533	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g262500
SBS	Chr1	29948301	C-T	Hetero	INTERGENIC
SBS	Chr2	323649	A-T	Homo	INTERGENIC
SBS	Chr2	9794444	A-T	Homo	INTERGENIC
SBS	Chr4	4015826	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g019500
SBS	Chr4	10237104	C-T	Homo	INTERGENIC
SBS	Chr5	18682437	G-A	Hetero	INTERGENIC
SBS	Chr7	5376781	C-T	Homo	INTERGENIC
SBS	Chr7	16423450	C-G	Hetero	INTRON
SBS	Chr8	10720203	C-A	Homo	INTERGENIC
SBS	Chr8	13143101	T-A	Homo	INTRON
SBS	Chr9	12316027	A-T	Hetero	INTERGENIC
SBS	Chr9	12429147	C-A	Homo	INTERGENIC
SBS	Chr11	12020397	T-A	Homo	INTRON
SBS	Chr11	24383939	T-G	Homo	INTERGENIC
SBS	Chr12	16857633	C-T	Hetero	INTERGENIC
SBS	Chr12	24990659	C-T	Hetero	INTERGENIC
SBS	Chr12	25915779	G-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	1361540	1361542	2
Deletion	Chr8	3336937	3336941	4
Deletion	Chr11	14521441	14521452	11
Deletion	Chr6	15140266	15140273	7
Deletion	Chr11	20284266	20284272	6	OsKitaake11g158500
Deletion	Chr7	24382289	24382291	2
Deletion	Chr5	24742351	24742352	1
Deletion	Chr2	35332312	35332322	10

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes