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Mutant Information

Mutant Name	FN4122-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4122-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 8124780 G-C Hetero INTRON
SBS Chr1 18034056 C-T Homo INTERGENIC
SBS Chr1 21560960 A-G Homo INTERGENIC
SBS Chr1 32512778 G-T Hetero INTERGENIC
SBS Chr1 32512779 A-T Hetero INTERGENIC
SBS Chr1 41982250 C-T Homo UTR_3_PRIME
SBS Chr1 43512614 G-T Homo INTERGENIC
SBS Chr2 10661146 A-G Hetero INTERGENIC
SBS Chr2 20197449 C-T Hetero INTERGENIC
SBS Chr2 25805953 C-T Homo INTERGENIC
SBS Chr3 23197945 A-G Hetero INTERGENIC
SBS Chr3 32828963 A-T Hetero INTERGENIC
SBS Chr3 36588480 G-T Hetero INTERGENIC
SBS Chr4 519329 G-C Hetero INTERGENIC
SBS Chr4 881789 A-T Hetero INTERGENIC
SBS Chr4 1989163 C-T Hetero INTERGENIC
SBS Chr4 18382294 C-A Hetero UTR_3_PRIME
SBS Chr4 21165387 T-C Hetero SYNONYMOUS_CODING
SBS Chr4 28725935 A-G Homo INTERGENIC
SBS Chr4 34141126 C-A Homo UTR_3_PRIME
SBS Chr5 11401694 T-A Hetero INTERGENIC
SBS Chr5 24931050 G-A Hetero INTERGENIC
SBS Chr5 27510998 C-T Hetero SYNONYMOUS_CODING
SBS Chr6 11902562 C-A Homo INTRON
SBS Chr6 27377820 G-T Homo SPLICE_SITE_ACCEPTOR OsKitaake06g246900
SBS Chr7 23686318 C-T Hetero INTERGENIC
SBS Chr7 28402718 G-A Homo INTERGENIC
SBS Chr9 8655686 G-T Homo INTERGENIC
SBS Chr10 16178654 A-G Hetero INTERGENIC
SBS Chr11 13362726 C-G Homo INTERGENIC
SBS Chr11 13362727 T-C Homo INTERGENIC
SBS Chr11 26017495 T-G Hetero INTERGENIC
SBS Chr12 7776876 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake12g083700
SBS Chr12 10538398 C-T Hetero INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 1008977 1008980 3 OsKitaake06g011100
Deletion Chr1 6449412 6449413 1
Deletion Chr12 9600575 9600577 2
Deletion Chr10 11961430 11961444 14
Deletion Chr7 14132017 14132023 6
Deletion Chr7 14327421 14327424 3
Deletion Chr7 16374001 16413000 38999
Deletion Chr7 16415001 16436000 20999 OsKitaake07g135200
Deletion Chr1 16461173 16461174 1
Deletion Chr12 16615331 16615345 14
Deletion Chr4 17069847 17069849 2
Deletion Chr2 19358001 19375000 16999 3
Deletion Chr5 27065054 27065055 1

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 6777026 6777031 4
Insertion Chr1 22704563 22704566 2
Insertion Chr2 22124254 22124261 6
Insertion Chr6 21525028 21525031 2
Insertion Chr7 26474452 26474455 2
Insertion Chr11 220874 220878 3
Insertion Chr8 21770418 21770425 6

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 19374765 19409191 OsKitaake02g189900
Inversion Chr2 19389379 19409189 OsKitaake02g189900

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8124780	G-C	Hetero	INTRON
SBS	Chr1	18034056	C-T	Homo	INTERGENIC
SBS	Chr1	21560960	A-G	Homo	INTERGENIC
SBS	Chr1	32512778	G-T	Hetero	INTERGENIC
SBS	Chr1	32512779	A-T	Hetero	INTERGENIC
SBS	Chr1	41982250	C-T	Homo	UTR_3_PRIME
SBS	Chr1	43512614	G-T	Homo	INTERGENIC
SBS	Chr2	10661146	A-G	Hetero	INTERGENIC
SBS	Chr2	20197449	C-T	Hetero	INTERGENIC
SBS	Chr2	25805953	C-T	Homo	INTERGENIC
SBS	Chr3	23197945	A-G	Hetero	INTERGENIC
SBS	Chr3	32828963	A-T	Hetero	INTERGENIC
SBS	Chr3	36588480	G-T	Hetero	INTERGENIC
SBS	Chr4	519329	G-C	Hetero	INTERGENIC
SBS	Chr4	881789	A-T	Hetero	INTERGENIC
SBS	Chr4	1989163	C-T	Hetero	INTERGENIC
SBS	Chr4	18382294	C-A	Hetero	UTR_3_PRIME
SBS	Chr4	21165387	T-C	Hetero	SYNONYMOUS_CODING
SBS	Chr4	28725935	A-G	Homo	INTERGENIC
SBS	Chr4	34141126	C-A	Homo	UTR_3_PRIME
SBS	Chr5	11401694	T-A	Hetero	INTERGENIC
SBS	Chr5	24931050	G-A	Hetero	INTERGENIC
SBS	Chr5	27510998	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr6	11902562	C-A	Homo	INTRON
SBS	Chr6	27377820	G-T	Homo	SPLICE_SITE_ACCEPTOR	OsKitaake06g246900
SBS	Chr7	23686318	C-T	Hetero	INTERGENIC
SBS	Chr7	28402718	G-A	Homo	INTERGENIC
SBS	Chr9	8655686	G-T	Homo	INTERGENIC
SBS	Chr10	16178654	A-G	Hetero	INTERGENIC
SBS	Chr11	13362726	C-G	Homo	INTERGENIC
SBS	Chr11	13362727	T-C	Homo	INTERGENIC
SBS	Chr11	26017495	T-G	Hetero	INTERGENIC
SBS	Chr12	7776876	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g083700
SBS	Chr12	10538398	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	1008977	1008980	3	OsKitaake06g011100
Deletion	Chr1	6449412	6449413	1
Deletion	Chr12	9600575	9600577	2
Deletion	Chr10	11961430	11961444	14
Deletion	Chr7	14132017	14132023	6
Deletion	Chr7	14327421	14327424	3
Deletion	Chr7	16374001	16413000	38999
Deletion	Chr7	16415001	16436000	20999	OsKitaake07g135200
Deletion	Chr1	16461173	16461174	1
Deletion	Chr12	16615331	16615345	14
Deletion	Chr4	17069847	17069849	2
Deletion	Chr2	19358001	19375000	16999	3
Deletion	Chr5	27065054	27065055	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	19374765	19409191	OsKitaake02g189900
Inversion	Chr2	19389379	19409189	OsKitaake02g189900

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes