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Mutant Information

Mutant Name	FN4123-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4123-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 20

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr2 551479 G-T Homo INTERGENIC
SBS Chr2 5862273 G-A Homo INTERGENIC
SBS Chr2 33855264 G-T Hetero INTERGENIC
SBS Chr2 35144426 A-T Hetero STOP_GAINED OsKitaake02g367700
SBS Chr3 13578786 C-T Hetero INTERGENIC
SBS Chr4 36176924 C-T Hetero INTRON
SBS Chr5 18682392 G-A Hetero INTERGENIC
SBS Chr6 4728252 G-T Homo NON_SYNONYMOUS_CODING OsKitaake06g063900
SBS Chr6 12470299 C-G Homo INTERGENIC
SBS Chr6 28830555 A-G Hetero INTERGENIC
SBS Chr7 12759998 G-A Hetero INTERGENIC
SBS Chr8 21559752 A-T Hetero INTRON
SBS Chr8 26421722 G-A Homo INTERGENIC
SBS Chr9 17348396 G-T Hetero INTERGENIC
SBS Chr10 2058103 G-A Hetero INTERGENIC
SBS Chr10 2058104 G-A Hetero INTERGENIC
SBS Chr10 23173807 C-A Homo INTRON
SBS Chr12 2944878 G-A Hetero INTRON
SBS Chr12 21748837 C-T Homo INTERGENIC
SBS Chr12 27112534 T-C Homo INTRON

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 420546 420552 6
Deletion Chr10 3640640 3640646 6
Deletion Chr3 6973001 6992000 18999 OsKitaake03g098200
Deletion Chr8 7276001 7323000 46999 OsKitaake08g069800
Deletion Chr6 7277001 7288000 10999 2
Deletion Chr1 13570297 13570305 8
Deletion Chr11 15922621 15922623 2 OsKitaake11g127700
Deletion Chr2 19880200 19880206 6
Deletion Chr7 19895878 19895888 10
Deletion Chr7 20160633 20160639 6
Deletion Chr4 20469210 20469213 3
Deletion Chr3 21966856 21966858 2
Deletion Chr3 24256488 24256500 12
Deletion Chr11 26140064 26140069 5
Deletion Chr2 34731734 34731742 8
Deletion Chr1 36754823 36754828 5

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 16382976 16382980 3
Insertion Chr4 17683195 17683198 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	551479	G-T	Homo	INTERGENIC
SBS	Chr2	5862273	G-A	Homo	INTERGENIC
SBS	Chr2	33855264	G-T	Hetero	INTERGENIC
SBS	Chr2	35144426	A-T	Hetero	STOP_GAINED	OsKitaake02g367700
SBS	Chr3	13578786	C-T	Hetero	INTERGENIC
SBS	Chr4	36176924	C-T	Hetero	INTRON
SBS	Chr5	18682392	G-A	Hetero	INTERGENIC
SBS	Chr6	4728252	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g063900
SBS	Chr6	12470299	C-G	Homo	INTERGENIC
SBS	Chr6	28830555	A-G	Hetero	INTERGENIC
SBS	Chr7	12759998	G-A	Hetero	INTERGENIC
SBS	Chr8	21559752	A-T	Hetero	INTRON
SBS	Chr8	26421722	G-A	Homo	INTERGENIC
SBS	Chr9	17348396	G-T	Hetero	INTERGENIC
SBS	Chr10	2058103	G-A	Hetero	INTERGENIC
SBS	Chr10	2058104	G-A	Hetero	INTERGENIC
SBS	Chr10	23173807	C-A	Homo	INTRON
SBS	Chr12	2944878	G-A	Hetero	INTRON
SBS	Chr12	21748837	C-T	Homo	INTERGENIC
SBS	Chr12	27112534	T-C	Homo	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	420546	420552	6
Deletion	Chr10	3640640	3640646	6
Deletion	Chr3	6973001	6992000	18999	OsKitaake03g098200
Deletion	Chr8	7276001	7323000	46999	OsKitaake08g069800
Deletion	Chr6	7277001	7288000	10999	2
Deletion	Chr1	13570297	13570305	8
Deletion	Chr11	15922621	15922623	2	OsKitaake11g127700
Deletion	Chr2	19880200	19880206	6
Deletion	Chr7	19895878	19895888	10
Deletion	Chr7	20160633	20160639	6
Deletion	Chr4	20469210	20469213	3
Deletion	Chr3	21966856	21966858	2
Deletion	Chr3	24256488	24256500	12
Deletion	Chr11	26140064	26140069	5
Deletion	Chr2	34731734	34731742	8
Deletion	Chr1	36754823	36754828	5

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes