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Mutant Information

Mutant Name	FN4124-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4124-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 33

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 19068464 T-C Hetero INTERGENIC
SBS Chr1 24089574 C-T Homo INTERGENIC
SBS Chr1 25113201 T-A Hetero INTERGENIC
SBS Chr1 25113202 T-A Hetero INTERGENIC
SBS Chr1 25830000 C-T Hetero INTERGENIC
SBS Chr1 33056164 G-A Hetero UTR_3_PRIME
SBS Chr1 34420920 C-T Hetero INTERGENIC
SBS Chr2 2555104 G-A Hetero INTERGENIC
SBS Chr2 6207947 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g084100
SBS Chr2 33253725 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake02g342200
SBS Chr3 27627346 A-T Homo INTERGENIC
SBS Chr4 4466144 C-T Hetero INTERGENIC
SBS Chr4 13809902 G-A Hetero INTERGENIC
SBS Chr5 27142978 G-T Homo NON_SYNONYMOUS_CODING OsKitaake05g244600
SBS Chr6 10172104 C-T Hetero INTERGENIC
SBS Chr6 17377304 T-C Hetero INTRON
SBS Chr7 25926035 A-T Hetero INTERGENIC
SBS Chr7 27605512 T-A Hetero INTERGENIC
SBS Chr7 29132453 C-T Hetero INTERGENIC
SBS Chr8 2046711 C-A Hetero SYNONYMOUS_CODING
SBS Chr8 3272097 C-G Hetero INTERGENIC
SBS Chr8 7330427 T-C Hetero INTERGENIC
SBS Chr8 18153185 C-T Hetero INTRON
SBS Chr8 20413750 C-T Homo INTERGENIC
SBS Chr8 24184074 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake08g186700
SBS Chr8 27138565 T-C Hetero INTERGENIC
SBS Chr9 12932455 C-T Hetero INTERGENIC
SBS Chr10 12528327 C-T Hetero INTERGENIC
SBS Chr10 23385059 A-G Hetero INTERGENIC
SBS Chr11 3963884 G-C Hetero INTERGENIC
SBS Chr11 23264544 G-T Homo INTERGENIC
SBS Chr11 23660570 G-A Hetero INTRON
SBS Chr12 10682079 A-T Hetero INTERGENIC

Deletions: 27

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 457668 457669 1
Deletion Chr3 1542704 1542709 5
Deletion Chr8 3736417 3736418 1
Deletion Chr5 4480079 4480082 3 OsKitaake05g052000
Deletion Chr3 5985478 5985481 3
Deletion Chr4 7430233 7430243 10
Deletion Chr5 7856121 7856127 6
Deletion Chr1 8188982 8188986 4
Deletion Chr2 8964974 8964975 1
Deletion Chr3 9461075 9461076 1 OsKitaake03g128600
Deletion Chr12 10723830 10723835 5
Deletion Chr1 12878057 12878060 3
Deletion Chr2 14747241 14747243 2
Deletion Chr1 16624831 16624834 3
Deletion Chr11 16991160 16991162 2
Deletion Chr7 17659912 17659915 3
Deletion Chr5 17828464 17828467 3
Deletion Chr6 20144001 20152000 7999 OsKitaake06g180500
Deletion Chr10 20255972 20255974 2
Deletion Chr3 20998496 20998502 6
Deletion Chr6 21057143 21057145 2
Deletion Chr4 21568395 21568400 5
Deletion Chr2 24332750 24332752 2
Deletion Chr1 25898909 25898922 13
Deletion Chr3 29832504 29832507 3
Deletion Chr4 33461884 33461892 8
Deletion Chr4 36800389 36800390 1 OsKitaake04g320900

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 22787292 22787296 3
Insertion Chr8 21632521 21632524 2
Insertion Chr10 23080719 23080724 4

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 518972 557783 OsKitaake03g008300
Inversion Chr3 520166 557787 OsKitaake03g008400
Inversion Chr2 33152716 33509871 OsKitaake02g346100
Inversion Chr2 33152728 33514322 OsKitaake02g346200

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr4 35778631 Chr3 520154 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	19068464	T-C	Hetero	INTERGENIC
SBS	Chr1	24089574	C-T	Homo	INTERGENIC
SBS	Chr1	25113201	T-A	Hetero	INTERGENIC
SBS	Chr1	25113202	T-A	Hetero	INTERGENIC
SBS	Chr1	25830000	C-T	Hetero	INTERGENIC
SBS	Chr1	33056164	G-A	Hetero	UTR_3_PRIME
SBS	Chr1	34420920	C-T	Hetero	INTERGENIC
SBS	Chr2	2555104	G-A	Hetero	INTERGENIC
SBS	Chr2	6207947	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g084100
SBS	Chr2	33253725	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g342200
SBS	Chr3	27627346	A-T	Homo	INTERGENIC
SBS	Chr4	4466144	C-T	Hetero	INTERGENIC
SBS	Chr4	13809902	G-A	Hetero	INTERGENIC
SBS	Chr5	27142978	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake05g244600
SBS	Chr6	10172104	C-T	Hetero	INTERGENIC
SBS	Chr6	17377304	T-C	Hetero	INTRON
SBS	Chr7	25926035	A-T	Hetero	INTERGENIC
SBS	Chr7	27605512	T-A	Hetero	INTERGENIC
SBS	Chr7	29132453	C-T	Hetero	INTERGENIC
SBS	Chr8	2046711	C-A	Hetero	SYNONYMOUS_CODING
SBS	Chr8	3272097	C-G	Hetero	INTERGENIC
SBS	Chr8	7330427	T-C	Hetero	INTERGENIC
SBS	Chr8	18153185	C-T	Hetero	INTRON
SBS	Chr8	20413750	C-T	Homo	INTERGENIC
SBS	Chr8	24184074	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g186700
SBS	Chr8	27138565	T-C	Hetero	INTERGENIC
SBS	Chr9	12932455	C-T	Hetero	INTERGENIC
SBS	Chr10	12528327	C-T	Hetero	INTERGENIC
SBS	Chr10	23385059	A-G	Hetero	INTERGENIC
SBS	Chr11	3963884	G-C	Hetero	INTERGENIC
SBS	Chr11	23264544	G-T	Homo	INTERGENIC
SBS	Chr11	23660570	G-A	Hetero	INTRON
SBS	Chr12	10682079	A-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	457668	457669	1
Deletion	Chr3	1542704	1542709	5
Deletion	Chr8	3736417	3736418	1
Deletion	Chr5	4480079	4480082	3	OsKitaake05g052000
Deletion	Chr3	5985478	5985481	3
Deletion	Chr4	7430233	7430243	10
Deletion	Chr5	7856121	7856127	6
Deletion	Chr1	8188982	8188986	4
Deletion	Chr2	8964974	8964975	1
Deletion	Chr3	9461075	9461076	1	OsKitaake03g128600
Deletion	Chr12	10723830	10723835	5
Deletion	Chr1	12878057	12878060	3
Deletion	Chr2	14747241	14747243	2
Deletion	Chr1	16624831	16624834	3
Deletion	Chr11	16991160	16991162	2
Deletion	Chr7	17659912	17659915	3
Deletion	Chr5	17828464	17828467	3
Deletion	Chr6	20144001	20152000	7999	OsKitaake06g180500
Deletion	Chr10	20255972	20255974	2
Deletion	Chr3	20998496	20998502	6
Deletion	Chr6	21057143	21057145	2
Deletion	Chr4	21568395	21568400	5
Deletion	Chr2	24332750	24332752	2
Deletion	Chr1	25898909	25898922	13
Deletion	Chr3	29832504	29832507	3
Deletion	Chr4	33461884	33461892	8
Deletion	Chr4	36800389	36800390	1	OsKitaake04g320900

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	518972	557783	OsKitaake03g008300
Inversion	Chr3	520166	557787	OsKitaake03g008400
Inversion	Chr2	33152716	33509871	OsKitaake02g346100
Inversion	Chr2	33152728	33514322	OsKitaake02g346200

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes