Search Kitaake

Mutant Information

Mutant Name	FN4125-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4125-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 24

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 12427462 T-A Homo INTRON
SBS Chr1 41728547 T-A Hetero INTERGENIC
SBS Chr2 8892103 C-A Homo STOP_GAINED OsKitaake02g111800
SBS Chr2 14617772 C-T Homo INTERGENIC
SBS Chr2 16437790 T-A Homo INTERGENIC
SBS Chr3 13780999 T-A Hetero INTERGENIC
SBS Chr3 32374754 A-G Homo INTERGENIC
SBS Chr3 37438983 T-C Hetero INTERGENIC
SBS Chr4 1538502 C-T Homo INTERGENIC
SBS Chr4 4461237 G-T Hetero INTERGENIC
SBS Chr4 13484483 G-A Homo NON_SYNONYMOUS_CODING OsKitaake04g064600
SBS Chr4 15209019 C-A Hetero INTERGENIC
SBS Chr5 1592779 A-T Hetero INTERGENIC
SBS Chr6 11581331 G-C Homo INTERGENIC
SBS Chr7 8337885 G-A Homo INTERGENIC
SBS Chr7 8337886 G-A Homo INTERGENIC
SBS Chr7 22088518 G-A Hetero INTERGENIC
SBS Chr8 1997674 T-A Hetero INTERGENIC
SBS Chr8 27459043 C-G Hetero INTERGENIC
SBS Chr8 28830264 G-A Hetero INTERGENIC
SBS Chr9 6102234 G-A Homo INTERGENIC
SBS Chr9 19026553 T-A Hetero INTERGENIC
SBS Chr11 18780185 T-C Homo INTRON
SBS Chr12 8493162 G-T Homo INTERGENIC

Deletions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 3711001 3760000 48999 6
Deletion Chr7 4141098 4141101 3
Deletion Chr7 7061110 7061112 2
Deletion Chr11 15031278 15031281 3
Deletion Chr1 20554341 20554345 4
Deletion Chr11 22429399 22429410 11
Deletion Chr1 38090001 38165000 74999 10

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 3973386 3973391 4
Insertion Chr1 10705859 10705868 8
Insertion Chr10 13191553 13191556 2
Insertion Chr11 9640495 9640498 2
Insertion Chr11 29617906 29617909 2
Insertion Chr11 23387913 23387915 1

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 21001199 Chr1 38162776 OsKitaake10g162600
Translocation Chr10 21001273 Chr1 38166336 OsKitaake10g162600
Translocation Chr12 24946935 Chr10 7457216
Translocation Chr4 34892624 Chr2 18869623 OsKitaake04g291800
Translocation Chr4 34894341 Chr2 18869622 OsKitaake04g291800

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12427462	T-A	Homo	INTRON
SBS	Chr1	41728547	T-A	Hetero	INTERGENIC
SBS	Chr2	8892103	C-A	Homo	STOP_GAINED	OsKitaake02g111800
SBS	Chr2	14617772	C-T	Homo	INTERGENIC
SBS	Chr2	16437790	T-A	Homo	INTERGENIC
SBS	Chr3	13780999	T-A	Hetero	INTERGENIC
SBS	Chr3	32374754	A-G	Homo	INTERGENIC
SBS	Chr3	37438983	T-C	Hetero	INTERGENIC
SBS	Chr4	1538502	C-T	Homo	INTERGENIC
SBS	Chr4	4461237	G-T	Hetero	INTERGENIC
SBS	Chr4	13484483	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g064600
SBS	Chr4	15209019	C-A	Hetero	INTERGENIC
SBS	Chr5	1592779	A-T	Hetero	INTERGENIC
SBS	Chr6	11581331	G-C	Homo	INTERGENIC
SBS	Chr7	8337885	G-A	Homo	INTERGENIC
SBS	Chr7	8337886	G-A	Homo	INTERGENIC
SBS	Chr7	22088518	G-A	Hetero	INTERGENIC
SBS	Chr8	1997674	T-A	Hetero	INTERGENIC
SBS	Chr8	27459043	C-G	Hetero	INTERGENIC
SBS	Chr8	28830264	G-A	Hetero	INTERGENIC
SBS	Chr9	6102234	G-A	Homo	INTERGENIC
SBS	Chr9	19026553	T-A	Hetero	INTERGENIC
SBS	Chr11	18780185	T-C	Homo	INTRON
SBS	Chr12	8493162	G-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	3711001	3760000	48999	6
Deletion	Chr7	4141098	4141101	3
Deletion	Chr7	7061110	7061112	2
Deletion	Chr11	15031278	15031281	3
Deletion	Chr1	20554341	20554345	4
Deletion	Chr11	22429399	22429410	11
Deletion	Chr1	38090001	38165000	74999	10

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	21001199	Chr1	38162776	OsKitaake10g162600
Translocation	Chr10	21001273	Chr1	38166336	OsKitaake10g162600
Translocation	Chr12	24946935	Chr10	7457216
Translocation	Chr4	34892624	Chr2	18869623	OsKitaake04g291800
Translocation	Chr4	34894341	Chr2	18869622	OsKitaake04g291800

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes