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| Mutant Information |
|---|
| Mutant Name | FN4126-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4126-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 27
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 21801534 | T-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 43474856 | C-A | Homo | UTR_5_PRIME | |
| SBS | Chr2 | 3027285 | C-A | Hetero | UTR_3_PRIME | |
| SBS | Chr2 | 7492794 | T-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 27336714 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 32154141 | G-A | Hetero | INTRON | |
| SBS | Chr3 | 5287138 | A-T | Homo | UTR_3_PRIME | |
| SBS | Chr3 | 8137102 | G-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake03g112700 |
| SBS | Chr3 | 8137103 | C-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake03g112700 |
| SBS | Chr3 | 11725946 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 30817577 | C-T | Hetero | INTRON | |
| SBS | Chr4 | 2378402 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 11594439 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 32353484 | T-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 32353487 | T-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 32533177 | A-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 10152206 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 20881068 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 30120487 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 16235377 | G-C | Homo | INTERGENIC | |
| SBS | Chr7 | 18145198 | T-C | Homo | INTERGENIC | |
| SBS | Chr8 | 24983551 | C-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 28713906 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 9999937 | C-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 16552471 | A-G | Hetero | INTERGENIC | |
| SBS | Chr10 | 23394519 | A-G | Homo | INTERGENIC | |
| SBS | Chr12 | 18692172 | A-G | Hetero | UTR_3_PRIME |
Deletions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr6 | 13846973 | 13846974 | 1 | |
| Deletion | Chr5 | 23248603 | 23248605 | 2 | |
| Deletion | Chr3 | 36855861 | 36855869 | 8 | OsKitaake03g411600 |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr1 | 20523924 | 20872940 | OsKitaake01g204500 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr11 | 13370370 | Chr3 | 11770821 | |
| Translocation | Chr11 | 13370901 | Chr3 | 11770821 |