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| Mutant Information |
|---|
| Mutant Name | FN4128-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4128-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 42
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 3664014 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 11534457 | C-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 18429906 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 33638066 | T-C | Hetero | INTRON | |
| SBS | Chr1 | 36895218 | C-T | Homo | INTRON | |
| SBS | Chr2 | 15823427 | G-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 16414419 | G-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 24452022 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 33693698 | T-C | Homo | UTR_3_PRIME | |
| SBS | Chr3 | 9832661 | G-T | Hetero | INTRON | |
| SBS | Chr3 | 17457575 | A-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 20018394 | G-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 30431006 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 34425196 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 2648100 | T-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 11859539 | T-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 11953828 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 17464889 | T-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake04g086700 |
| SBS | Chr5 | 18254492 | T-C | Homo | INTERGENIC | |
| SBS | Chr6 | 2935723 | C-A | Homo | INTERGENIC | |
| SBS | Chr6 | 13211498 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 13211499 | C-T | Homo | INTERGENIC | |
| SBS | Chr6 | 13211500 | C-T | Homo | INTERGENIC | |
| SBS | Chr7 | 439350 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 10529822 | C-T | Homo | INTERGENIC | |
| SBS | Chr7 | 11137638 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 65404 | A-G | Homo | UTR_3_PRIME | |
| SBS | Chr9 | 5251211 | C-G | Hetero | INTERGENIC | |
| SBS | Chr9 | 8657321 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 12334904 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 22358649 | C-T | Homo | INTERGENIC | |
| SBS | Chr10 | 10371762 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 21632551 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 506957 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 7076595 | A-T | Homo | INTERGENIC | |
| SBS | Chr11 | 18364608 | T-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 10433076 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 11522770 | G-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 13464839 | A-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 14648659 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 18989312 | T-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 23990379 | A-G | Homo | INTERGENIC |
Deletions: 8
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr3 | 10001 | 107000 | 96999 | 11 |
| Deletion | Chr5 | 622173 | 622176 | 3 | |
| Deletion | Chr4 | 3993001 | 5016000 | 1022999 | 41 |
| Deletion | Chr9 | 9315487 | 9315488 | 1 | |
| Deletion | Chr2 | 14766001 | 14848000 | 81999 | OsKitaake02g157400 |
| Deletion | Chr5 | 18473001 | 18484000 | 10999 | 3 |
| Deletion | Chr5 | 21987701 | 21987710 | 9 | |
| Deletion | Chr11 | 26259858 | 26259859 | 1 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr7 | 18906381 | 18906385 | 3 |
Translocations: 4
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr2 | 4579492 | Chr1 | 5420473 | OsKitaake01g070000 |
| Translocation | Chr2 | 4580009 | Chr1 | 5422987 | OsKitaake01g070000 |
| Translocation | Chr4 | 35861810 | Chr3 | 99628 | 2 |
| Translocation | Chr4 | 35861811 | Chr1 | 5420464 | 2 |