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| Mutant Information |
|---|
| Mutant Name | FN4129-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4129-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 32
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 38558371 | C-G | Homo | INTERGENIC | |
| SBS | Chr1 | 38558375 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 15893479 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 26826759 | A-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 5335562 | G-A | Hetero | STOP_GAINED | OsKitaake03g075400 |
| SBS | Chr3 | 5335563 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake03g075400 |
| SBS | Chr3 | 23791540 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 28028689 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 3221182 | G-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake04g016826 |
| SBS | Chr4 | 32726018 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 2796692 | A-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 5336854 | C-T | Homo | INTRON | |
| SBS | Chr6 | 6768428 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 7373293 | A-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake06g095600 |
| SBS | Chr6 | 12922057 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 1201020 | A-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake07g016800 |
| SBS | Chr7 | 5623720 | T-C | Homo | NON_SYNONYMOUS_CODING | OsKitaake07g068300 |
| SBS | Chr7 | 14303577 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 15769363 | C-T | Homo | INTRON | |
| SBS | Chr8 | 12570123 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 16485390 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 3660604 | A-C | Hetero | UTR_3_PRIME | |
| SBS | Chr9 | 7905891 | T-G | Hetero | INTERGENIC | |
| SBS | Chr9 | 9132954 | T-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 21530311 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 11960885 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 20170841 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 26844964 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 13623679 | T-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 14230555 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 17793099 | A-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 19017910 | T-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake12g140400 |
Deletions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr7 | 8464411 | 8464484 | 73 | |
| Deletion | Chr11 | 9050070 | 9050088 | 18 | |
| Deletion | Chr11 | 11293210 | 11293214 | 4 | |
| Deletion | Chr11 | 15832001 | 15905000 | 72999 | 4 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr2 | 13369086 | 13369088 | 1 | |
| Insertion | Chr6 | 20215454 | 20215458 | 3 |
Inversions: 5
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr7 | 31907 | 155079 | OsKitaake07g000200 |
| Inversion | Chr7 | 31917 | 155089 | OsKitaake07g000200 |
| Inversion | Chr1 | 17356777 | 17904191 | |
| Inversion | Chr1 | 17356789 | 17904199 | |
| Inversion | Chr9 | 18770402 | 18938643 | OsKitaake09g151200 |
Translocations: 4
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr9 | 456998 | Chr2 | 12152329 | 2 |
| Translocation | Chr7 | 16874214 | Chr2 | 27459671 | |
| Translocation | Chr9 | 18770397 | Chr2 | 27460158 | |
| Translocation | Chr9 | 18938636 | Chr7 | 16874818 | OsKitaake09g151200 |