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Mutant Information

Mutant Name	FN413-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN413-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 19

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 20576833 A-G Homo INTERGENIC
SBS Chr1 22155947 G-A Homo INTERGENIC
SBS Chr2 19405957 T-C Homo INTERGENIC
SBS Chr2 25841990 G-A Homo INTERGENIC
SBS Chr2 35903120 G-T Homo INTERGENIC
SBS Chr4 8735913 G-T Homo INTERGENIC
SBS Chr4 33424861 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake04g274600
SBS Chr4 33424862 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake04g274600
SBS Chr7 26852054 G-A Hetero INTRON
SBS Chr8 10287854 T-G Homo INTERGENIC
SBS Chr9 5348635 A-T Hetero INTERGENIC
SBS Chr9 18573873 C-T Homo INTERGENIC
SBS Chr11 18773930 T-C Homo INTRON
SBS Chr11 25582960 T-A Hetero INTERGENIC
SBS Chr11 25582967 C-A Hetero INTERGENIC
SBS Chr12 9084159 A-G Hetero INTRON
SBS Chr12 9586492 T-C Hetero INTERGENIC
SBS Chr12 22492518 G-T Homo INTERGENIC
SBS Chr12 22492519 A-T Homo INTERGENIC

Deletions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 6008660 6008661 1
Deletion Chr12 6021150 6021155 5
Deletion Chr12 11584975 11584980 5
Deletion Chr2 13414269 13414270 1
Deletion Chr11 21422810 21422811 1
Deletion Chr3 24390650 24390662 12
Deletion Chr5 30165667 30165668 1
Deletion Chr1 42584779 42584781 2

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 1061702 1061705 2
Insertion Chr6 13592277 13592280 2
Insertion Chr7 8659994 8659999 4
Insertion Chr11 1441861 1441865 3
Insertion Chr1 38196203 38196210 6 OsKitaake01g407400
Insertion Chr3 19007812 19007815 2
Insertion Chr9 10068067 10068069 1

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 3989001 Chr1 4936800 OsKitaake01g065800
Translocation Chr7 3994961 Chr1 4936795 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	20576833	A-G	Homo	INTERGENIC
SBS	Chr1	22155947	G-A	Homo	INTERGENIC
SBS	Chr2	19405957	T-C	Homo	INTERGENIC
SBS	Chr2	25841990	G-A	Homo	INTERGENIC
SBS	Chr2	35903120	G-T	Homo	INTERGENIC
SBS	Chr4	8735913	G-T	Homo	INTERGENIC
SBS	Chr4	33424861	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g274600
SBS	Chr4	33424862	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g274600
SBS	Chr7	26852054	G-A	Hetero	INTRON
SBS	Chr8	10287854	T-G	Homo	INTERGENIC
SBS	Chr9	5348635	A-T	Hetero	INTERGENIC
SBS	Chr9	18573873	C-T	Homo	INTERGENIC
SBS	Chr11	18773930	T-C	Homo	INTRON
SBS	Chr11	25582960	T-A	Hetero	INTERGENIC
SBS	Chr11	25582967	C-A	Hetero	INTERGENIC
SBS	Chr12	9084159	A-G	Hetero	INTRON
SBS	Chr12	9586492	T-C	Hetero	INTERGENIC
SBS	Chr12	22492518	G-T	Homo	INTERGENIC
SBS	Chr12	22492519	A-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	6008660	6008661	1
Deletion	Chr12	6021150	6021155	5
Deletion	Chr12	11584975	11584980	5
Deletion	Chr2	13414269	13414270	1
Deletion	Chr11	21422810	21422811	1
Deletion	Chr3	24390650	24390662	12
Deletion	Chr5	30165667	30165668	1
Deletion	Chr1	42584779	42584781	2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	3989001	Chr1	4936800	OsKitaake01g065800
Translocation	Chr7	3994961	Chr1	4936795	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes