Search Kitaake
Mutant Information |
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Mutant Name | FN4130-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN4130-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Variant Information |
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Single base substitutions: 34
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
SBS | Chr1 | 1434964 | C-A | Homo | INTERGENIC | |
SBS | Chr1 | 4767273 | T-A | Homo | INTERGENIC | |
SBS | Chr1 | 13227406 | G-C | Hetero | INTERGENIC | |
SBS | Chr1 | 24272555 | C-A | Hetero | INTRON | |
SBS | Chr2 | 9282634 | T-C | Hetero | INTERGENIC | |
SBS | Chr2 | 11334976 | G-A | Hetero | INTERGENIC | |
SBS | Chr4 | 7106836 | G-C | Hetero | INTERGENIC | |
SBS | Chr4 | 18155123 | T-C | Hetero | INTERGENIC | |
SBS | Chr4 | 25305669 | T-G | Hetero | INTRON | |
SBS | Chr5 | 2307131 | T-G | Hetero | INTERGENIC | |
SBS | Chr5 | 11429253 | G-A | Hetero | INTERGENIC | |
SBS | Chr5 | 12208052 | C-A | Homo | INTERGENIC | |
SBS | Chr5 | 19431362 | G-A | Hetero | INTERGENIC | |
SBS | Chr5 | 20070625 | C-T | Hetero | INTERGENIC | |
SBS | Chr7 | 675134 | A-T | Homo | INTERGENIC | |
SBS | Chr7 | 8109782 | G-T | Homo | INTRON | |
SBS | Chr7 | 13954834 | T-A | Homo | INTERGENIC | |
SBS | Chr7 | 16372000 | G-A | Hetero | INTERGENIC | |
SBS | Chr7 | 16498379 | C-G | Hetero | INTERGENIC | |
SBS | Chr8 | 22734377 | T-C | Hetero | INTERGENIC | |
SBS | Chr10 | 198072 | C-G | Homo | INTERGENIC | |
SBS | Chr10 | 7268607 | G-A | Homo | INTERGENIC | |
SBS | Chr10 | 11204787 | G-T | Hetero | INTERGENIC | |
SBS | Chr10 | 18644422 | G-C | Hetero | INTERGENIC | |
SBS | Chr10 | 18747402 | C-T | Hetero | INTRON | |
SBS | Chr10 | 18747929 | G-C | Hetero | INTRON | |
SBS | Chr11 | 17149982 | C-A | Homo | INTERGENIC | |
SBS | Chr12 | 1981510 | C-T | Homo | INTERGENIC | |
SBS | Chr12 | 6047847 | G-A | Hetero | INTERGENIC | |
SBS | Chr12 | 7723305 | G-A | Hetero | INTERGENIC | |
SBS | Chr12 | 7723306 | G-A | Hetero | INTERGENIC | |
SBS | Chr12 | 9399048 | C-T | Hetero | SYNONYMOUS_CODING | |
SBS | Chr12 | 11632650 | A-T | Hetero | INTERGENIC | |
SBS | Chr12 | 22476135 | C-T | Hetero | INTRON |
Deletions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
Deletion | Chr1 | 3304113 | 3304120 | 7 | |
Deletion | Chr7 | 13722001 | 13730000 | 7999 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
Insertion | Chr1 | 24761923 | 24761926 | 2 | |
Insertion | Chr3 | 663972 | 663975 | 2 | |
Insertion | Chr3 | 16285087 | 16285090 | 2 | |
Insertion | Chr5 | 24026447 | 24026452 | 4 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
Inversion | Chr2 | 5651795 | 5988289 | |
Inversion | Chr2 | 5651796 | 5988294 |
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
Translocation | Chr3 | 28249341 | Chr1 | 24003208 | OsKitaake03g292100 |