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| Mutant Information |
|---|
| Mutant Name | FN4132-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4132-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 26
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 9556836 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 22276392 | C-A | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr2 | 19309164 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 26744392 | T-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 31748872 | C-G | Hetero | UTR_5_PRIME | |
| SBS | Chr2 | 32282141 | A-T | Hetero | INTRON | |
| SBS | Chr3 | 3496601 | C-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 19733579 | A-G | Homo | INTERGENIC | |
| SBS | Chr5 | 36210 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 6226451 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 13936663 | C-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 19206904 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 24558166 | A-G | Homo | UTR_5_PRIME | |
| SBS | Chr6 | 27471635 | G-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 27760865 | A-G | Hetero | INTRON | |
| SBS | Chr7 | 26718303 | G-A | Homo | INTERGENIC | |
| SBS | Chr9 | 12726477 | C-G | Hetero | INTERGENIC | |
| SBS | Chr10 | 954403 | C-G | Hetero | INTERGENIC | |
| SBS | Chr10 | 955118 | A-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 2033616 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 7908418 | G-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 23733870 | G-T | Homo | INTERGENIC | |
| SBS | Chr11 | 3087754 | T-G | Homo | INTRON | |
| SBS | Chr11 | 15655532 | A-G | Hetero | INTRON | |
| SBS | Chr12 | 12859247 | T-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 19908007 | G-A | Hetero | INTERGENIC |
Deletions: 15
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr4 | 3169763 | 3169764 | 1 | OsKitaake04g016775 |
| Deletion | Chr10 | 3618492 | 3618493 | 1 | |
| Deletion | Chr10 | 3932374 | 3932376 | 2 | |
| Deletion | Chr1 | 5136707 | 5136716 | 9 | |
| Deletion | Chr11 | 5357870 | 5357871 | 1 | |
| Deletion | Chr11 | 20263549 | 20263555 | 6 | |
| Deletion | Chr8 | 20807520 | 20807521 | 1 | |
| Deletion | Chr3 | 20863363 | 20863373 | 10 | |
| Deletion | Chr9 | 21755125 | 21755134 | 9 | |
| Deletion | Chr11 | 27432462 | 27432463 | 1 | |
| Deletion | Chr3 | 28185180 | 28185182 | 2 | |
| Deletion | Chr2 | 29187591 | 29187600 | 9 | OsKitaake02g293800 |
| Deletion | Chr3 | 30724145 | 30724147 | 2 | |
| Deletion | Chr1 | 32494653 | 32494657 | 4 | |
| Deletion | Chr1 | 42015852 | 42015863 | 11 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr3 | 21159885 | 21542043 | OsKitaake03g234400 |
| Inversion | Chr3 | 21159893 | 21542056 | OsKitaake03g234400 |
Translocations: 3
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr12 | 4979745 | Chr3 | 4791040 | |
| Translocation | Chr10 | 14466474 | Chr1 | 23400821 | 2 |
| Translocation | Chr10 | 14466481 | Chr1 | 23401182 | 2 |