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| Mutant Information |
|---|
| Mutant Name | FN4133-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4133-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 28
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 14185424 | A-G | Homo | INTERGENIC | |
| SBS | Chr1 | 21111672 | T-C | Homo | INTERGENIC | |
| SBS | Chr1 | 25901478 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 27154182 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake01g264400 |
| SBS | Chr1 | 32417328 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 42181554 | A-C | Homo | INTERGENIC | |
| SBS | Chr3 | 9073944 | C-A | Hetero | INTRON | |
| SBS | Chr3 | 11843373 | C-G | Homo | NON_SYNONYMOUS_CODING | OsKitaake03g161200 |
| SBS | Chr4 | 10861450 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 11479140 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 20632446 | A-C | Hetero | INTRON | |
| SBS | Chr5 | 26679698 | G-T | Homo | INTERGENIC | |
| SBS | Chr5 | 28024292 | C-T | Homo | INTRON | |
| SBS | Chr6 | 12812373 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 19229348 | C-T | Hetero | INTRON | |
| SBS | Chr6 | 23386483 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 28419686 | T-A | Hetero | INTRON | |
| SBS | Chr7 | 26091387 | T-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 29444474 | A-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 11314598 | C-T | Homo | INTERGENIC | |
| SBS | Chr9 | 4585024 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 7254982 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 14543451 | T-C | Hetero | INTERGENIC | |
| SBS | Chr10 | 8046859 | C-T | Homo | INTERGENIC | |
| SBS | Chr11 | 20184653 | A-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 20248616 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake11g158100 |
| SBS | Chr11 | 20248619 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake11g158100 |
| SBS | Chr12 | 2061018 | A-G | Hetero | INTERGENIC |
Deletions: 13
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr9 | 3318720 | 3318722 | 2 | |
| Deletion | Chr12 | 3846913 | 3846926 | 13 | |
| Deletion | Chr1 | 5379492 | 5379494 | 2 | |
| Deletion | Chr11 | 12493686 | 12493695 | 9 | |
| Deletion | Chr6 | 17383506 | 17383522 | 16 | |
| Deletion | Chr2 | 17756345 | 17756361 | 16 | |
| Deletion | Chr8 | 18911087 | 18911089 | 2 | |
| Deletion | Chr6 | 19254067 | 19254070 | 3 | |
| Deletion | Chr6 | 23249185 | 23249192 | 7 | |
| Deletion | Chr4 | 31265906 | 31265907 | 1 | |
| Deletion | Chr1 | 36296001 | 36341000 | 44999 | 5 |
| Deletion | Chr1 | 40035790 | 40035793 | 3 | OsKitaake01g434000 |
| Deletion | Chr1 | 40654671 | 40654673 | 2 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr8 | 13983035 | 13983038 | 2 | OsKitaake08g111000  |
| Insertion | Chr10 | 17376163 | 17376165 | 1 |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr11 | 2758322 | 2777785 | OsKitaake11g038800 |
| Inversion | Chr11 | 2758328 | 2777792 | OsKitaake11g038800 |
| Inversion | Chr1 | 36261516 | 36289759 | OsKitaake01g384700 |
| Inversion | Chr1 | 36261570 | 36341607 | 2 |
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr4 | 3080609 | Chr3 | 30850838 | OsKitaake03g323700 |