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| Mutant Information |
|---|
| Mutant Name | FN4134-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4134-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 31
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 13042329 | G-A | Homo | INTERGENIC | |
| SBS | Chr1 | 13387447 | G-C | Homo | INTERGENIC | |
| SBS | Chr1 | 19204758 | A-G | Homo | INTERGENIC | |
| SBS | Chr2 | 2461572 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 12868081 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 19577564 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 32906123 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 3345682 | T-C | Homo | INTERGENIC | |
| SBS | Chr3 | 8123857 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 18358102 | G-T | Homo | INTERGENIC | |
| SBS | Chr3 | 30826163 | G-A | Homo | INTRON | |
| SBS | Chr4 | 12350780 | A-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 12430577 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 32072065 | G-A | Homo | INTERGENIC | |
| SBS | Chr5 | 1366027 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 2849026 | G-A | Hetero | INTRON | |
| SBS | Chr6 | 1451974 | T-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 1995677 | A-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 5270765 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 17779309 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 20001918 | G-T | Homo | INTRON | |
| SBS | Chr6 | 23975457 | G-A | Homo | INTERGENIC | |
| SBS | Chr7 | 4612249 | C-T | Homo | INTRON | |
| SBS | Chr8 | 15488926 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 28627825 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 29298618 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 2193405 | T-C | Homo | INTERGENIC | |
| SBS | Chr10 | 187981 | C-T | Homo | INTERGENIC | |
| SBS | Chr11 | 29695740 | T-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 7773291 | A-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 10117427 | G-A | Hetero | INTRON |
Deletions: 17
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr8 | 1014590 | 1014599 | 9 | |
| Deletion | Chr11 | 2837216 | 2837219 | 3 | |
| Deletion | Chr4 | 3291186 | 3291196 | 10 | |
| Deletion | Chr7 | 5679047 | 5679061 | 14 | |
| Deletion | Chr4 | 10385001 | 10397000 | 11999 | 3 |
| Deletion | Chr8 | 10825451 | 10825459 | 8 | |
| Deletion | Chr2 | 10855190 | 10855195 | 5 | |
| Deletion | Chr6 | 11101073 | 11101075 | 2 | OsKitaake06g123100 |
| Deletion | Chr6 | 15267424 | 15267426 | 2 | OsKitaake06g151700 |
| Deletion | Chr9 | 17311472 | 17311473 | 1 | |
| Deletion | Chr8 | 17556609 | 17556614 | 5 | |
| Deletion | Chr12 | 17612927 | 17612929 | 2 | |
| Deletion | Chr1 | 18969236 | 18969244 | 8 | |
| Deletion | Chr6 | 19447896 | 19447897 | 1 | |
| Deletion | Chr3 | 20097001 | 20416000 | 318999 | 5 |
| Deletion | Chr5 | 25622972 | 25622974 | 2 | |
| Deletion | Chr3 | 30720625 | 30720631 | 6 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr2 | 4429682 | 4429689 | 6 |
Translocations: 4
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr10 | 27144 | Chr2 | 33938576 | |
| Translocation | Chr10 | 27302 | Chr2 | 33939622 | |
| Translocation | Chr8 | 2764449 | Chr3 | 7453187 | OsKitaake03g103400 |
| Translocation | Chr8 | 3627302 | Chr3 | 7452946 | OsKitaake03g103400 |