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Mutant Information

Mutant Name	FN4135-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4135-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 16960332 C-A Homo INTERGENIC
SBS Chr1 34640815 G-A Hetero INTERGENIC
SBS Chr1 40440938 A-T Hetero INTERGENIC
SBS Chr1 44197545 T-C Hetero UTR_3_PRIME
SBS Chr2 11288667 G-T Hetero INTERGENIC
SBS Chr2 34726485 A-T Homo UTR_3_PRIME
SBS Chr3 1431346 C-T Homo INTERGENIC
SBS Chr3 5867799 G-T Hetero INTERGENIC
SBS Chr3 5867801 C-T Hetero INTERGENIC
SBS Chr3 30577163 T-C Homo SYNONYMOUS_CODING
SBS Chr3 36488404 T-A Homo NON_SYNONYMOUS_CODING OsKitaake03g405600
SBS Chr4 6166114 G-A Homo INTERGENIC
SBS Chr4 15860394 C-T Homo INTERGENIC
SBS Chr4 18188137 C-G Homo INTERGENIC
SBS Chr4 30177286 G-T Hetero UTR_5_PRIME
SBS Chr4 31038570 A-T Hetero INTERGENIC
SBS Chr5 5109329 C-A Homo INTERGENIC
SBS Chr5 5109330 G-A Homo INTERGENIC
SBS Chr5 29067089 T-A Homo INTRON
SBS Chr5 29067090 T-C Homo INTRON
SBS Chr6 1396447 C-A Hetero INTERGENIC
SBS Chr6 2244150 G-C Hetero INTERGENIC
SBS Chr6 8371216 G-A Homo INTRON
SBS Chr6 12729113 A-T Homo INTERGENIC
SBS Chr6 13339758 C-A Hetero INTERGENIC
SBS Chr6 26754298 G-T Homo INTERGENIC
SBS Chr6 29246320 G-A Hetero SYNONYMOUS_CODING
SBS Chr7 27409120 G-C Homo INTERGENIC
SBS Chr8 10263839 C-G Hetero INTERGENIC
SBS Chr9 6128488 G-A Hetero INTRON
SBS Chr9 14909875 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake09g102500
SBS Chr9 16404118 A-T Hetero INTERGENIC
SBS Chr10 14350797 T-C Homo INTERGENIC
SBS Chr11 9903918 A-T Hetero INTERGENIC
SBS Chr11 10606907 G-A Homo INTERGENIC
SBS Chr12 1350602 A-G Homo INTERGENIC
SBS Chr12 7323240 T-C Hetero INTRON

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 940883 940890 7
Deletion Chr6 2742601 2742606 5
Deletion Chr9 7090943 7090947 4
Deletion Chr4 15975737 15975751 14
Deletion Chr6 19695001 19737000 41999 3
Deletion Chr6 20899838 20899845 7
Deletion Chr8 23337682 23337683 1
Deletion Chr8 29065524 29065533 9
Deletion Chr1 29818678 29818679 1
Deletion Chr4 32089757 32089758 1
Deletion Chr2 34001123 34001133 10
Deletion Chr3 36683756 36683762 6
Deletion Chr1 40329095 40329113 18

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 5510289 5510292 2
Insertion Chr8 25598633 25598636 2
Insertion Chr12 23333501 23333506 4

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 265144 Chr10 4254025 OsKitaake12g002901
Translocation Chr12 1282829 Chr10 4254709 OsKitaake12g018800
Translocation Chr8 17979089 Chr1 23582085
Translocation Chr8 17982770 Chr1 23582087

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16960332	C-A	Homo	INTERGENIC
SBS	Chr1	34640815	G-A	Hetero	INTERGENIC
SBS	Chr1	40440938	A-T	Hetero	INTERGENIC
SBS	Chr1	44197545	T-C	Hetero	UTR_3_PRIME
SBS	Chr2	11288667	G-T	Hetero	INTERGENIC
SBS	Chr2	34726485	A-T	Homo	UTR_3_PRIME
SBS	Chr3	1431346	C-T	Homo	INTERGENIC
SBS	Chr3	5867799	G-T	Hetero	INTERGENIC
SBS	Chr3	5867801	C-T	Hetero	INTERGENIC
SBS	Chr3	30577163	T-C	Homo	SYNONYMOUS_CODING
SBS	Chr3	36488404	T-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g405600
SBS	Chr4	6166114	G-A	Homo	INTERGENIC
SBS	Chr4	15860394	C-T	Homo	INTERGENIC
SBS	Chr4	18188137	C-G	Homo	INTERGENIC
SBS	Chr4	30177286	G-T	Hetero	UTR_5_PRIME
SBS	Chr4	31038570	A-T	Hetero	INTERGENIC
SBS	Chr5	5109329	C-A	Homo	INTERGENIC
SBS	Chr5	5109330	G-A	Homo	INTERGENIC
SBS	Chr5	29067089	T-A	Homo	INTRON
SBS	Chr5	29067090	T-C	Homo	INTRON
SBS	Chr6	1396447	C-A	Hetero	INTERGENIC
SBS	Chr6	2244150	G-C	Hetero	INTERGENIC
SBS	Chr6	8371216	G-A	Homo	INTRON
SBS	Chr6	12729113	A-T	Homo	INTERGENIC
SBS	Chr6	13339758	C-A	Hetero	INTERGENIC
SBS	Chr6	26754298	G-T	Homo	INTERGENIC
SBS	Chr6	29246320	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr7	27409120	G-C	Homo	INTERGENIC
SBS	Chr8	10263839	C-G	Hetero	INTERGENIC
SBS	Chr9	6128488	G-A	Hetero	INTRON
SBS	Chr9	14909875	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g102500
SBS	Chr9	16404118	A-T	Hetero	INTERGENIC
SBS	Chr10	14350797	T-C	Homo	INTERGENIC
SBS	Chr11	9903918	A-T	Hetero	INTERGENIC
SBS	Chr11	10606907	G-A	Homo	INTERGENIC
SBS	Chr12	1350602	A-G	Homo	INTERGENIC
SBS	Chr12	7323240	T-C	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	940883	940890	7
Deletion	Chr6	2742601	2742606	5
Deletion	Chr9	7090943	7090947	4
Deletion	Chr4	15975737	15975751	14
Deletion	Chr6	19695001	19737000	41999	3
Deletion	Chr6	20899838	20899845	7
Deletion	Chr8	23337682	23337683	1
Deletion	Chr8	29065524	29065533	9
Deletion	Chr1	29818678	29818679	1
Deletion	Chr4	32089757	32089758	1
Deletion	Chr2	34001123	34001133	10
Deletion	Chr3	36683756	36683762	6
Deletion	Chr1	40329095	40329113	18

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	265144	Chr10	4254025	OsKitaake12g002901
Translocation	Chr12	1282829	Chr10	4254709	OsKitaake12g018800
Translocation	Chr8	17979089	Chr1	23582085
Translocation	Chr8	17982770	Chr1	23582087

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes