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Mutant Information

Mutant Name	FN4136-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4136-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 26

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 24119781 G-T Hetero INTERGENIC
SBS Chr1 35339699 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake01g372700
SBS Chr2 21885660 G-A Homo INTRON
SBS Chr2 32009897 C-A Hetero INTERGENIC
SBS Chr2 35085208 C-T Hetero SYNONYMOUS_CODING
SBS Chr3 15295744 C-T Homo INTERGENIC
SBS Chr4 8962 G-C Hetero INTERGENIC
SBS Chr4 4752838 T-G Hetero INTERGENIC
SBS Chr4 5767519 A-G Hetero INTERGENIC
SBS Chr5 15737457 G-T Hetero SYNONYMOUS_CODING
SBS Chr5 22775708 C-A Hetero INTERGENIC
SBS Chr5 25953324 G-T Hetero INTERGENIC
SBS Chr5 25953325 T-C Hetero INTERGENIC
SBS Chr5 25953328 G-T Hetero INTERGENIC
SBS Chr5 26400329 T-C Hetero INTERGENIC
SBS Chr5 27801330 G-C Hetero INTERGENIC
SBS Chr6 28215443 A-G Homo NON_SYNONYMOUS_CODING OsKitaake06g257400
SBS Chr7 17794486 C-T Homo INTERGENIC
SBS Chr8 5690749 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake08g062400
SBS Chr10 2220426 A-T Hetero INTERGENIC
SBS Chr10 4200690 A-T Hetero INTERGENIC
SBS Chr11 769971 T-C Hetero INTERGENIC
SBS Chr11 17737818 T-A Homo INTERGENIC
SBS Chr12 548741 T-C Hetero INTERGENIC
SBS Chr12 11258478 C-T Hetero INTERGENIC
SBS Chr12 26728431 G-A Homo INTERGENIC

Deletions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 13263707 13263716 9
Deletion Chr10 13333001 13412000 78999 4
Deletion Chr5 24707001 24732000 24999 7
Deletion Chr5 26384515 26384518 3
Deletion Chr12 27023519 27023840 321
Deletion Chr3 28417554 28417557 3

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 9298312 9298314 1
Insertion Chr2 23455247 23455250 2
Insertion Chr4 21854946 21854950 3
Insertion Chr8 27232135 27232143 7
Insertion Chr12 10016519 10016522 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 31617764 32486485 2
Inversion Chr4 31617787 32486503 2

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 9672893 Chr4 16231682 OsKitaake04g079600
Translocation Chr4 16199806 Chr3 4001312

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	24119781	G-T	Hetero	INTERGENIC
SBS	Chr1	35339699	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g372700
SBS	Chr2	21885660	G-A	Homo	INTRON
SBS	Chr2	32009897	C-A	Hetero	INTERGENIC
SBS	Chr2	35085208	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr3	15295744	C-T	Homo	INTERGENIC
SBS	Chr4	8962	G-C	Hetero	INTERGENIC
SBS	Chr4	4752838	T-G	Hetero	INTERGENIC
SBS	Chr4	5767519	A-G	Hetero	INTERGENIC
SBS	Chr5	15737457	G-T	Hetero	SYNONYMOUS_CODING
SBS	Chr5	22775708	C-A	Hetero	INTERGENIC
SBS	Chr5	25953324	G-T	Hetero	INTERGENIC
SBS	Chr5	25953325	T-C	Hetero	INTERGENIC
SBS	Chr5	25953328	G-T	Hetero	INTERGENIC
SBS	Chr5	26400329	T-C	Hetero	INTERGENIC
SBS	Chr5	27801330	G-C	Hetero	INTERGENIC
SBS	Chr6	28215443	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g257400
SBS	Chr7	17794486	C-T	Homo	INTERGENIC
SBS	Chr8	5690749	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g062400
SBS	Chr10	2220426	A-T	Hetero	INTERGENIC
SBS	Chr10	4200690	A-T	Hetero	INTERGENIC
SBS	Chr11	769971	T-C	Hetero	INTERGENIC
SBS	Chr11	17737818	T-A	Homo	INTERGENIC
SBS	Chr12	548741	T-C	Hetero	INTERGENIC
SBS	Chr12	11258478	C-T	Hetero	INTERGENIC
SBS	Chr12	26728431	G-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	13263707	13263716	9
Deletion	Chr10	13333001	13412000	78999	4
Deletion	Chr5	24707001	24732000	24999	7
Deletion	Chr5	26384515	26384518	3
Deletion	Chr12	27023519	27023840	321
Deletion	Chr3	28417554	28417557	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	31617764	32486485	2
Inversion	Chr4	31617787	32486503	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes