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Mutant Information

Mutant Name	FN4137-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4137-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 25

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 31547508 G-A Hetero INTERGENIC
SBS Chr1 40454152 C-T Hetero INTRON
SBS Chr2 11900714 G-A Hetero INTERGENIC
SBS Chr2 24498819 T-A Hetero INTERGENIC
SBS Chr2 31150985 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake02g318500
SBS Chr3 11610158 A-T Homo INTERGENIC
SBS Chr3 34420671 A-T Homo UTR_3_PRIME
SBS Chr4 7326367 G-C Hetero INTERGENIC
SBS Chr4 10869411 G-A Hetero INTERGENIC
SBS Chr4 14203136 C-T Hetero INTERGENIC
SBS Chr4 16005005 C-T Hetero INTERGENIC
SBS Chr5 5054375 C-G Hetero INTRON
SBS Chr6 21390646 T-C Homo INTERGENIC
SBS Chr7 11935089 C-T Hetero INTERGENIC
SBS Chr8 8581098 G-A Hetero INTERGENIC
SBS Chr9 2679349 G-A Homo INTERGENIC
SBS Chr9 4437692 C-T Homo INTERGENIC
SBS Chr10 17797007 G-A Homo INTRON
SBS Chr10 22416287 G-T Hetero UTR_5_PRIME
SBS Chr10 22416288 C-T Hetero UTR_5_PRIME
SBS Chr10 23751706 T-C Hetero INTRON
SBS Chr11 6610050 A-G Hetero INTERGENIC
SBS Chr12 11115886 A-G Homo INTERGENIC
SBS Chr12 16694757 A-G Hetero INTERGENIC
SBS Chr12 26623872 T-C Hetero UTR_5_PRIME

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 51630 51631 1
Deletion Chr12 1345732 1345742 10
Deletion Chr8 2033468 2033469 1
Deletion Chr2 2231796 2231797 1
Deletion Chr4 3496661 3496673 12
Deletion Chr7 9151039 9151040 1
Deletion Chr11 13140630 13140634 4
Deletion Chr8 22147066 22147067 1 OsKitaake08g169000
Deletion Chr4 24357001 24384000 26999 6
Deletion Chr5 24783724 24783726 2
Deletion Chr1 27326905 27326920 15 OsKitaake01g265900

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 5175611 Chr4 36920227 2
Translocation Chr6 7812496 Chr4 36920272 OsKitaake04g323100

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	31547508	G-A	Hetero	INTERGENIC
SBS	Chr1	40454152	C-T	Hetero	INTRON
SBS	Chr2	11900714	G-A	Hetero	INTERGENIC
SBS	Chr2	24498819	T-A	Hetero	INTERGENIC
SBS	Chr2	31150985	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g318500
SBS	Chr3	11610158	A-T	Homo	INTERGENIC
SBS	Chr3	34420671	A-T	Homo	UTR_3_PRIME
SBS	Chr4	7326367	G-C	Hetero	INTERGENIC
SBS	Chr4	10869411	G-A	Hetero	INTERGENIC
SBS	Chr4	14203136	C-T	Hetero	INTERGENIC
SBS	Chr4	16005005	C-T	Hetero	INTERGENIC
SBS	Chr5	5054375	C-G	Hetero	INTRON
SBS	Chr6	21390646	T-C	Homo	INTERGENIC
SBS	Chr7	11935089	C-T	Hetero	INTERGENIC
SBS	Chr8	8581098	G-A	Hetero	INTERGENIC
SBS	Chr9	2679349	G-A	Homo	INTERGENIC
SBS	Chr9	4437692	C-T	Homo	INTERGENIC
SBS	Chr10	17797007	G-A	Homo	INTRON
SBS	Chr10	22416287	G-T	Hetero	UTR_5_PRIME
SBS	Chr10	22416288	C-T	Hetero	UTR_5_PRIME
SBS	Chr10	23751706	T-C	Hetero	INTRON
SBS	Chr11	6610050	A-G	Hetero	INTERGENIC
SBS	Chr12	11115886	A-G	Homo	INTERGENIC
SBS	Chr12	16694757	A-G	Hetero	INTERGENIC
SBS	Chr12	26623872	T-C	Hetero	UTR_5_PRIME

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	51630	51631	1
Deletion	Chr12	1345732	1345742	10
Deletion	Chr8	2033468	2033469	1
Deletion	Chr2	2231796	2231797	1
Deletion	Chr4	3496661	3496673	12
Deletion	Chr7	9151039	9151040	1
Deletion	Chr11	13140630	13140634	4
Deletion	Chr8	22147066	22147067	1	OsKitaake08g169000
Deletion	Chr4	24357001	24384000	26999	6
Deletion	Chr5	24783724	24783726	2
Deletion	Chr1	27326905	27326920	15	OsKitaake01g265900

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	5175611	Chr4	36920227	2
Translocation	Chr6	7812496	Chr4	36920272	OsKitaake04g323100

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes