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| Mutant Information |
|---|
| Mutant Name | FN4138-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4138-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 30
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 12439230 | G-A | Homo | INTERGENIC | |
| SBS | Chr1 | 29050874 | T-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 3595084 | G-C | Hetero | SPLICE_SITE_REGION | |
| SBS | Chr3 | 13659546 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 14255903 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 37285043 | T-G | Hetero | INTRON | |
| SBS | Chr4 | 3345411 | A-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 10785246 | G-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 11264777 | G-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 14469195 | C-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake04g068500 |
| SBS | Chr5 | 14686189 | C-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 20253292 | T-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 11090763 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 13916543 | A-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 15376055 | A-G | Hetero | INTRON | |
| SBS | Chr8 | 28385043 | T-C | Homo | INTERGENIC | |
| SBS | Chr9 | 13778143 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 22452965 | C-T | Hetero | START_GAINED | |
| SBS | Chr10 | 4504120 | C-G | Hetero | INTERGENIC | |
| SBS | Chr10 | 6323003 | A-C | Hetero | INTERGENIC | |
| SBS | Chr10 | 15507148 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 20874542 | A-T | Homo | INTERGENIC | |
| SBS | Chr10 | 21368046 | T-C | Homo | INTERGENIC | |
| SBS | Chr11 | 23007761 | T-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 4266718 | T-C | Homo | INTRON | |
| SBS | Chr12 | 12356323 | T-A | Homo | INTERGENIC | |
| SBS | Chr12 | 15837200 | C-A | Homo | INTERGENIC | |
| SBS | Chr12 | 23599007 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 24561738 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 26006561 | G-A | Homo | INTERGENIC |
Deletions: 7
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr8 | 4875179 | 4875188 | 9 | |
| Deletion | Chr10 | 11149474 | 11149479 | 5 | |
| Deletion | Chr12 | 12255154 | 12255156 | 2 | |
| Deletion | Chr1 | 17039441 | 17039442 | 1 | |
| Deletion | Chr1 | 25685526 | 25685530 | 4 | |
| Deletion | Chr1 | 29926335 | 29926339 | 4 | |
| Deletion | Chr1 | 35763581 | 35763583 | 2 | OsKitaake01g378700 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr7 | 5277268 | 5277272 | 3 | |
| Insertion | Chr12 | 12822467 | 12822477 | 9 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr6 | 25616656 | 26100911 | OsKitaake06g227800 |
| Inversion | Chr6 | 25617625 | 26100912 | OsKitaake06g227900 |
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr9 | 3254336 | Chr6 | 30409768 |