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Mutant Information |
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Mutant Name | FN4139-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN4139-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Variant Information |
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Single base substitutions: 27
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
SBS | Chr1 | 15939147 | G-T | Homo | INTERGENIC | |
SBS | Chr1 | 16106792 | G-C | Hetero | INTERGENIC | |
SBS | Chr2 | 4156727 | T-A | Hetero | INTERGENIC | |
SBS | Chr2 | 16785118 | A-G | Hetero | INTERGENIC | |
SBS | Chr3 | 22219954 | C-T | Homo | INTERGENIC | |
SBS | Chr3 | 27687945 | C-T | Hetero | INTERGENIC | |
SBS | Chr4 | 8679854 | G-A | Hetero | INTERGENIC | |
SBS | Chr4 | 18026568 | G-A | Hetero | INTERGENIC | |
SBS | Chr4 | 18304158 | T-C | Hetero | INTERGENIC | |
SBS | Chr6 | 30840020 | T-A | Hetero | SPLICE_SITE_REGION | |
SBS | Chr7 | 1345640 | T-A | Hetero | INTERGENIC | |
SBS | Chr7 | 25171653 | C-T | Hetero | INTERGENIC | |
SBS | Chr8 | 5528947 | C-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake08g060500 |
SBS | Chr8 | 28057268 | A-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake08g235400 |
SBS | Chr9 | 4595534 | T-A | Hetero | INTERGENIC | |
SBS | Chr10 | 4242299 | T-A | Hetero | INTERGENIC | |
SBS | Chr10 | 4242300 | C-A | Hetero | INTERGENIC | |
SBS | Chr10 | 8171246 | G-A | Hetero | INTERGENIC | |
SBS | Chr10 | 21232200 | A-C | Hetero | UTR_3_PRIME | |
SBS | Chr11 | 2051005 | G-A | Homo | INTERGENIC | |
SBS | Chr11 | 15951382 | A-G | Homo | INTERGENIC | |
SBS | Chr12 | 5212666 | C-T | Hetero | INTERGENIC | |
SBS | Chr12 | 8504232 | G-A | Hetero | INTERGENIC | |
SBS | Chr12 | 14717359 | A-T | Hetero | INTERGENIC | |
SBS | Chr12 | 16754749 | G-A | Hetero | INTERGENIC | |
SBS | Chr12 | 24405565 | G-T | Hetero | INTERGENIC | |
SBS | Chr12 | 24405566 | C-T | Hetero | INTERGENIC |
Deletions: 20
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
Translocation | Chr11 | 8583589 | Chr2 | 8960084 | OsKitaake02g112600 |
Translocation | Chr11 | 8584386 | Chr2 | 8960089 | OsKitaake02g112600 |