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Mutant Information 

Mutant NameFN4139-S  [Download]
Generation M2
Genus Species Oryza Sativa
Cultivar Kitaake
Alignment File (BAM File) Download FN4139-S Alignment File
Seed Availability Yes [Order Seeds]


Variant Information 

Single base substitutions: 27

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS  Chr115939147G-THomoINTERGENIC
SBS  Chr116106792G-CHeteroINTERGENIC
SBS  Chr24156727T-AHeteroINTERGENIC
SBS  Chr216785118A-GHeteroINTERGENIC
SBS  Chr322219954C-THomoINTERGENIC
SBS  Chr327687945C-THeteroINTERGENIC
SBS  Chr48679854G-AHeteroINTERGENIC
SBS  Chr418026568G-AHeteroINTERGENIC
SBS  Chr418304158T-CHeteroINTERGENIC
SBS  Chr630840020T-AHeteroSPLICE_SITE_REGION
SBS  Chr71345640T-AHeteroINTERGENIC
SBS  Chr725171653C-THeteroINTERGENIC
SBS  Chr85528947C-GHeteroNON_SYNONYMOUS_CODINGOsKitaake08g060500
SBS  Chr828057268A-THomoNON_SYNONYMOUS_CODINGOsKitaake08g235400
SBS  Chr94595534T-AHeteroINTERGENIC
SBS  Chr104242299T-AHeteroINTERGENIC
SBS  Chr104242300C-AHeteroINTERGENIC
SBS  Chr108171246G-AHeteroINTERGENIC
SBS  Chr1021232200A-CHeteroUTR_3_PRIME
SBS  Chr112051005G-AHomoINTERGENIC
SBS  Chr1115951382A-GHomoINTERGENIC
SBS  Chr125212666C-THeteroINTERGENIC
SBS  Chr128504232G-AHeteroINTERGENIC
SBS  Chr1214717359A-THeteroINTERGENIC
SBS  Chr1216754749G-AHeteroINTERGENIC
SBS  Chr1224405565G-THeteroINTERGENIC
SBS  Chr1224405566C-THeteroINTERGENIC

Deletions: 20

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion  Chr11285671828567213
Deletion  Chr11352575435257584
Deletion  Chr53862859386287011
Deletion  Chr5447694044769411
Deletion  Chr115217437521746326
Deletion  Chr2688152368815241
Deletion  Chr11831017283101753
Deletion  Chr411128001113880002599992
Deletion  Chr1112671141126711421
Deletion  Chr912867198128672013
Deletion  Chr1131096311310964918
Deletion  Chr914183770141837799
Deletion  Chr116012629160126334
Deletion  Chr216872679168726812
Deletion  Chr517227408172274135
Deletion  Chr518859053188590607
Deletion  Chr92130900121355000459996
Deletion  Chr6271437422714375210
Deletion  Chr131589470315894788
Deletion  Chr333022680330226811

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation  Chr118583589Chr28960084OsKitaake02g112600
Translocation  Chr118584386Chr28960089OsKitaake02g112600